wilkelab / Opfi

A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
https://opfi.readthedocs.io/
MIT License
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Enable small array detection by pilercr #16

Closed alexismhill3 closed 4 years ago

alexismhill3 commented 4 years ago

Issue: By design, pilercr filters out putative CRISPR arrays with only 2 repeats. Since transposon-associated arrays tend to be small, this automatic filtering limits the utility of pilercr.

Fixed by making a small modification to how pilercr sets global variables in the main implementation file.