Fixes spacing and docstring formatting inconsistencies in Gene Finder functions/classes. I'm not currently following any specific style guidelines, but the intent was to eliminate crazy within-module style differences that arose while working on this for the better part of a year.
Also removed mentions of CRISPR-transposons (or anything overly project specific) from docstrings, and added tests for running Gene Finder with mmseqs2/Diamond instead of BLAST. We never ended up using this for our project, but I went to the trouble of implementing it so I thought it would be worthwhile to fully test it.
Fixes spacing and docstring formatting inconsistencies in Gene Finder functions/classes. I'm not currently following any specific style guidelines, but the intent was to eliminate crazy within-module style differences that arose while working on this for the better part of a year.
Also removed mentions of CRISPR-transposons (or anything overly project specific) from docstrings, and added tests for running Gene Finder with mmseqs2/Diamond instead of BLAST. We never ended up using this for our project, but I went to the trouble of implementing it so I thought it would be worthwhile to fully test it.