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wilkelab / Opfi

A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
https://opfi.readthedocs.io/
MIT License
21 stars 5 forks source link

Installation using a conda environment #202

Closed Thomieh73 closed 3 years ago

Thomieh73 commented 3 years ago

Hi, I tend to install software via conda environments, to keep my system clean and that is also how I did this installation on my macbook. Maybe you can use it.

I therefore had a workaround to install opfi.

I set-up a conda environment.

conda create -n opfi
conda activate opfi

Then I install the dependencies via conda.

conda install -c bioconda blast=2.12.2
conda install -c bioconda diamond=2.0.11  mmseqs2=13.45111  piler-cr=1.06 genericrepeatfinder=1.0
conda install -c anaconda python

Then install opfi with pip3

pip3 install opfi

Then I ran the tutorial to test the installation.