Allows the user to control whether intermediate hits are written to a file (i.e. all hits against the reference databases generated during the run, even those ultimately excluded from the final results).
Adds two new arguments to Pipeline.run() - record_all_hits and all_hits_outfile with defaults False and None, respectively. Setting record_all_hits=True tells Crisposon to keep track of everything.
Allows the user to control whether intermediate hits are written to a file (i.e. all hits against the reference databases generated during the run, even those ultimately excluded from the final results).
Adds two new arguments to
Pipeline.run()-record_all_hitsandall_hits_outfilewith defaultsFalseandNone, respectively. Settingrecord_all_hits=Truetells Crisposon to keep track of everything.