wilkelab / Opfi

A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.
https://opfi.readthedocs.io/
MIT License
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Resolves #61 #76

Closed alexismhill3 closed 4 years ago

alexismhill3 commented 4 years ago

Modifies utils.get_neighborhood_ranges so that it knows how long the working contig is. Now when it tries to figure out where the candidate regions should be (which is accomplished by padding the coordinates of ORFs that matched bait proteins and then merging regions the overlap into a final coordinate) it can adjust by the real upper bound of the data.