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wilkelab / cinful

A fully automated pipeline to identify microcins along with their associated immunity proteins and export machinery
GNU General Public License v3.0
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signal match 3 orfs upstream and downstream of CvaB #35

Open tijeco opened 3 years ago

tijeco commented 3 years ago

Sometimes, the best microcin hit doesn't end up too near the CvaB, which may be fine. I think it would also be useful to report hits from the filtered microcin peptides that are three orfs up or downstream from CvaB, as putative exploratory options.

tijeco commented 3 years ago

Proposal: Maybe this doesn't have to be in v1.0.0. I don't think it is absolutely necessary for the initial manuscript, but will certainly be useful in the future when attempting to expand search space.

I propose this gets looped into candidate_immunity, and just change the name to proximal_canditate.