I would like to use cinful.py to be an access point for the snakefile so that users can simply run cinful -d /directory to run the pipeline.
Of course, from there we can include numerous configuration options, but this is the starting point. The snakefile and rules directory needs to be included in the python package.
This is a biggie, but shouldn't be too difficult.
I would like to use cinful.py to be an access point for the snakefile so that users can simply run
cinful -d /directoryto run the pipeline.Of course, from there we can include numerous configuration options, but this is the starting point. The snakefile and rules directory needs to be included in the python package.