will-rowe groot issues - Githubissues

will-rowe / groot

A resistome profiler for Graphing Resistance Out Of meTagenomes

MIT License

65 stars 8 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

panic: k size is greater than sequence length (31 vs 25)

#54 arpit20328 closed 4 months ago
1
Build problem with go-metro while executing the tests

#53 martin-g closed 6 months ago
1
GROOT and long reads

#52 taylorjohnsonm closed 4 months ago
1
Card db

#51 kayobianco closed 1 month ago
1
Paired-end reads information

#50 hkaspersen closed 4 months ago
2
Problem downloading card database

#49 wasimbt closed 2 years ago
1
panic: **k size is greater than sequence length (31 vs 29)**

#48 GomathiNayagam closed 3 years ago
1
Abundance table

#47 mhmism closed 4 months ago
2
Read Count Clarification

#46 EmilyCrossette closed 3 years ago
1
Error on installation from source

#45 noellenoyes closed 3 years ago
1
how to select reasonable ARG result ?

#44 feihongloveworld closed 3 years ago
1
protein database maybe More conservative than DNA

#43 feihongloveworld closed 4 years ago
1
patch for data race

#42 will-rowe closed 4 years ago
0
memory improvements

#41 will-rowe closed 4 years ago
0
groot-db output issues

#40 LeonardosMageiros opened 4 years ago
2
accuracy and memory improvements

#39 will-rowe closed 4 years ago
0
updating docs

#38 will-rowe closed 4 years ago
0
fixing up the travis tests

#37 will-rowe closed 4 years ago
0
removing archiver and associated incompat dependencies, fixing up Go mod

#36 will-rowe closed 4 years ago
0
porting over baby-goot performance improvements

#35 will-rowe closed 4 years ago
0
Groot containment searching

#34 LeonardosMageiros closed 4 years ago
3
out of memory error ( > 256 GB)

#33 rizkg closed 4 years ago
4
Trimming and read length?

#32 Thomieh73 closed 4 years ago
3
Out-of-memory failure v0.8.6

#31 EmilyCrossette closed 4 years ago
3
checksum error for CARD

#30 will-rowe closed 4 years ago
2
Building custom database, memory overconsumption.

#29 Sebastien-Raguideau closed 4 years ago
4
Containment not option not present in 0.8.5 on OSX

#28 dcdanko closed 4 years ago
3
Interpreting output plots

#27 ghost closed 5 years ago
4
Now in brew

#26 tseemann closed 5 years ago
1
fixing minhash linting, lazy khf hash funcs

#25 will-rowe closed 5 years ago
0
encountered error: mean read length is outside the graph window size (+/- 10 bases)

#24 lancetxiao closed 5 years ago
1
bumping to 0.8.6

#23 will-rowe closed 5 years ago
0
Could the "groot" be used for the paired-end reads?

#22 lancetxiao closed 5 years ago
1
Get the database error "groot get -d arg-annot"

#21 lancetxiao closed 5 years ago
3
ntHash update has broken GROOT

#20 will-rowe closed 5 years ago
1
Cleanup

#19 will-rowe closed 5 years ago
0
unhelpful crash message when file in index is empty

#18 flashton2003 closed 4 years ago
2
option to output GFA during indexing

#17 will-rowe opened 5 years ago
0
update databases

#16 will-rowe closed 4 years ago
1
Invalid filename chars in plot pngs

#15 boulund closed 5 years ago
3
Build command returns error

#14 grassoste closed 5 years ago
2
Inconsistent results with very similar read length thresholds

#13 alexmsalmeida closed 6 years ago
3
Merge dev into master

#12 will-rowe closed 6 years ago
0
Increase accuracy of containment search seeding (and reduce memory usage)

#11 boulund closed 4 years ago
5
Encountered error: gob: encoder: message too big

#10 boulund closed 6 years ago
8
Merging dev - adding --containment search

#9 will-rowe closed 6 years ago
0
Could not unpack the tarball after downloading the arg-annot database

#8 ropolomx closed 6 years ago
5
mean read length is outside the graph window size (+/- 10 bases)

#7 cimendes closed 6 years ago
8
additional changes after reviewer comments

#6 will-rowe closed 6 years ago
0
Addressing reviewer comments

#5 will-rowe closed 6 years ago
0