Open jianshu93 opened 2 years ago
Dear Will,
With the newest go version 1.16, I have the following error:
(base) [jianshu@c391 fasta]$ hulk sketch --fasta -f S_Baltica_OS675.fna -o ./S_Baltica_OS675.hulk.sketch 2021/12/26 18:24:00 this is hulk (version 1.0.0) 2021/12/26 18:24:00 please cite Rowe et al. 2019, doi: https://doi.org/10.1186/s40168-019-0653-2 2021/12/26 18:24:00 starting the sketch subcommand 2021/12/26 18:24:00 checking parameters... 2021/12/26 18:24:00 mode: FASTA 2021/12/26 18:24:00 no. processors: 1 2021/12/26 18:24:00 minimizer k-mer size: 21 2021/12/26 18:24:00 minimizer window size: 9 2021/12/26 18:24:00 sketch size: 50 2021/12/26 18:24:00 streaming: disabled 2021/12/26 18:24:00 concept drift: disabled 2021/12/26 18:24:00 number of bins in k-mer spectrum: 194481 2021/12/26 18:24:00 adding KHF sketch: false 2021/12/26 18:24:00 adding KMV sketch: false 2021/12/26 18:24:00 initialising sketching pipeline... 2021/12/26 18:24:00 initialising the processes 2021/12/26 18:24:00 connecting data streams 2021/12/26 18:24:00 number of processes added to the sketching pipeline: 4 2021/12/26 18:24:00 number of minions in the sketching pool: 1 2021/12/26 18:24:00 finding minimizers... 2021/12/26 18:24:00 generating final histosketch of k-mer spectra... panic: send on closed channel
goroutine 8 [running]: github.com/will-rowe/hulk/src/pipeline.(Minion).Start.func1(0xc00010c0f0) /opt/conda/conda-bld/hulk_1563274818218/work/src/github.com/will-rowe/hulk/src/pipeline/minion.go:56 +0x5e created by github.com/will-rowe/hulk/src/pipeline.(Minion).Start /opt/conda/conda-bld/hulk_1563274818218/work/src/github.com/will-rowe/hulk/src/pipeline/minion.go:35 +0x3f
Is that because the new version of go?
Thanks,
Jianshu
S_Baltica_OS675.fna.zip
Dear Will,
With the newest go version 1.16, I have the following error:
(base) [jianshu@c391 fasta]$ hulk sketch --fasta -f S_Baltica_OS675.fna -o ./S_Baltica_OS675.hulk.sketch 2021/12/26 18:24:00 this is hulk (version 1.0.0) 2021/12/26 18:24:00 please cite Rowe et al. 2019, doi: https://doi.org/10.1186/s40168-019-0653-2 2021/12/26 18:24:00 starting the sketch subcommand 2021/12/26 18:24:00 checking parameters... 2021/12/26 18:24:00 mode: FASTA 2021/12/26 18:24:00 no. processors: 1 2021/12/26 18:24:00 minimizer k-mer size: 21 2021/12/26 18:24:00 minimizer window size: 9 2021/12/26 18:24:00 sketch size: 50 2021/12/26 18:24:00 streaming: disabled 2021/12/26 18:24:00 concept drift: disabled 2021/12/26 18:24:00 number of bins in k-mer spectrum: 194481 2021/12/26 18:24:00 adding KHF sketch: false 2021/12/26 18:24:00 adding KMV sketch: false 2021/12/26 18:24:00 initialising sketching pipeline... 2021/12/26 18:24:00 initialising the processes 2021/12/26 18:24:00 connecting data streams 2021/12/26 18:24:00 number of processes added to the sketching pipeline: 4 2021/12/26 18:24:00 number of minions in the sketching pool: 1 2021/12/26 18:24:00 finding minimizers... 2021/12/26 18:24:00 generating final histosketch of k-mer spectra... panic: send on closed channel
goroutine 8 [running]: github.com/will-rowe/hulk/src/pipeline.(Minion).Start.func1(0xc00010c0f0) /opt/conda/conda-bld/hulk_1563274818218/work/src/github.com/will-rowe/hulk/src/pipeline/minion.go:56 +0x5e created by github.com/will-rowe/hulk/src/pipeline.(Minion).Start /opt/conda/conda-bld/hulk_1563274818218/work/src/github.com/will-rowe/hulk/src/pipeline/minion.go:35 +0x3f
Is that because the new version of go?
Thanks,
Jianshu