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williamritchie / IRFinder

Detecting intron retention from RNA-Seq experiments
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IRBase appears to be down #132

Closed h-joshi closed 3 years ago

h-joshi commented 3 years ago

Hi Team, IRBase appears to be down (http://mimirna.centenary.org.au/irfinder/database/)

Attached image shows what I see when attempting to view RNA-seq dataset for ERR208903 - Human - epithelial

image

ulfschmitz commented 3 years ago

Hi h-joshi,

Thanks for notifying us about this issue. We have fixed it now.

Best wishes, Ulf

ULF SCHMITZ, PhD Head, Computational BioMedicine Lab Cancer Institute NSW Early Career Fellow Associate Faculty, Gene and Stem Cell Therapy Program, Centenary Institute Conjoint Senior Lecturer, Faculty of Medicine & Health, University of Sydney

Building 93 RPA Hospital | Missenden Road Camperdown 2050 | NSW | Australia T: +61 2 9565 6209 | W: https://tinyurl.com/y2gfropr

On 16 Dec 2020, at 9:07 pm, h-joshi notifications@github.com wrote:

Hi Team, IRBase appears to be down (http://mimirna.centenary.org.au/irfinder/database/ https://www.google.com/url?q=http://mimirna.centenary.org.au/irfinder/database/&source=gmail-imap&ust=1608718040000000&usg=AOvVaw0rfJRn_jvqsfLHoW5WQkfs)

Attached image shows what I see when attempting to view RNA-seq dataset for ERR208903 - Human - epithelial

https://www.google.com/url?q=https://user-images.githubusercontent.com/1222657/102334018-5075fa80-3fe2-11eb-91f8-fdd892d3bc58.png&source=gmail-imap&ust=1608718040000000&usg=AOvVaw3e-44hb49veTOOOlI5sEhK — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://www.google.com/url?q=https://github.com/williamritchie/IRFinder/issues/132&source=gmail-imap&ust=1608718040000000&usg=AOvVaw3uMrSWg6t7svoloteTGtWO, or unsubscribe https://www.google.com/url?q=https://github.com/notifications/unsubscribe-auth/AECEAWLVKZPQ73TZUXN3U7TSVCBFPANCNFSM4U5XAADQ&source=gmail-imap&ust=1608718040000000&usg=AOvVaw1cVoAkcSnzAfkzaRXshVh6.

-- https://www.centenary.org.au

h-joshi commented 3 years ago

Thanks Ulf.

Incidentally, is there anywhere where those files can be downloaded in bulk? (in a single zip for instance). That would be incredibly handy.

ulfschmitz commented 3 years ago

Sorry, but this is currently not possible.

On 17 Dec 2020, at 11:17 am, h-joshi notifications@github.com wrote:

Thanks Ulf.

Incidentally, is there anywhere where those files can be downloaded in bulk? (in a single zip for instance). That would be incredibly handy.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://www.google.com/url?q=https://github.com/williamritchie/IRFinder/issues/132%23issuecomment-747118426&source=gmail-imap&ust=1608769064000000&usg=AOvVaw3c9hJtzsgV8hy7fjeS7pxH, or unsubscribe https://www.google.com/url?q=https://github.com/notifications/unsubscribe-auth/AECEAWJUQJ7RACFGHNIGYHDSVFE2PANCNFSM4U5XAADQ&source=gmail-imap&ust=1608769064000000&usg=AOvVaw3lIfI4hBB0UUpmed2joKaF.

-- https://www.centenary.org.au

dg520 commented 3 years ago

@ulfschmitz Ulf, thanks for taking care of the IRBase site! @h-joshi Could you please start a Dropbox file request or something similar, so that I can ship the entire IRBase to you? It costs about 5.5G space. For local usage, please decompress it and consult the README.txt inside.