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willpearse / phyloGenerator

Automated Phylogeny Generation for Ecologists
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PATHd8 issues on Linux #22

Closed willpearse closed 11 years ago

willpearse commented 11 years ago

PATHd8 seems to be causing problems for some people - it's not running.

File "phyloGenerator.py", line 3790, in <module> main() File "phyloGenerator.py", line 3764, in main currentState.rateSmooth() File "phyloGenerator.py", line 3260, in rateSmooth success = PATHd8() File "phyloGenerator.py", line 3161, in PATHd8 self.smoothPhylogeny = rateSmooth(self.phylogeny, sequenceLength=length) File "phyloGenerator.py", line 1686, in rateSmooth with open(tempPATHd8Output, 'r') as tempFile: IOError: [Errno 2] No such file or directory: 'tempPATHd8Output'