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willros / nanomux

Demultiplex your nanopore reads
GNU General Public License v3.0
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cannot install #2

Closed Jia-Xiu closed 4 months ago

Jia-Xiu commented 4 months ago

Hi William,

I've asked our dry lab manager to install your package on our HPC. However, we are encountering a problem. Please refer to the error message below. Do you have any suggestions to solve the issue?

Thanks in advance.

Best, Xiu

pip install -e . Obtaining file:///home/tools/nanomux/nanomux Preparing metadata (setup.py) ... done Collecting pyfastx==2.0.2 Using cached pyfastx-2.0.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.1 MB) Requirement already satisfied: polars in /home/groups/VEO/tools/nanomux/myenv/lib/python3.6/site-packages (from nanomux==0.1.0) (0.12.5) ERROR: Could not find a version that satisfies the requirement polars-ds (from nanomux) (from versions: none) ERROR: No matching distribution found for polars-ds

pip install polars-ds==0.1.2 ERROR: Could not find a version that satisfies the requirement polars-ds==0.1.2 (from versions: none) ERROR: No matching distribution found for polars-ds==0.1.2

willros commented 4 months ago

Hi,

Hmm, the polars-ds version should be 0.4.4 (i.e. the latest), so pip install polars-ds should be enough.

I don't know why it says 0.1.2.

Try again with that change. I cloned the repo again fresh and tried on our server and it worked.

Thanks for letting me know, William

Jia-Xiu commented 4 months ago

Hi, we found out that it was the version of python. It did not work with python3 (installing the correct version of polars-ds), but it worked with python3.9. Best, Xiu

willros commented 4 months ago

I see. Thanks for the update.

Let me know how the package works for you! William