willtownes / nsf-paper

Nonnegative spatial factorization for multivariate count data
GNU Lesser General Public License v3.0
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Uninstallable mofapy2 version #11

Closed yeswzc closed 5 months ago

yeswzc commented 5 months ago

Hi, I wantted to install the version of mofapy2 you used, but it seems not installable (see below). Can I install a different version?

pip install git+git://github.com/bioFAM/mofapy2.git@8f6ffcb5b18d22b3f44ff2a06bcb92f2806afed0

Collecting git+git://github.com/bioFAM/mofapy2.git@8f6ffcb5b18d22b3f44ff2a06bcb92f2806afed0 Cloning git://github.com/bioFAM/mofapy2.git (to revision 8f6ffcb5b18d22b3f44ff2a06bcb92f2806afed0) to /tmp/pip-req-build-llimfara Running command git clone --filter=blob:none --quiet git://github.com/bioFAM/mofapy2.git /tmp/pip-req-build-llimfara fatal: unable to look up github.com (port 9418) (Name or service not known) error: subprocess-exited-with-error

× git clone --filter=blob:none --quiet git://github.com/bioFAM/mofapy2.git /tmp/pip-req-build-llimfara did not run successfully. │ exit code: 128 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error

× git clone --filter=blob:none --quiet git://github.com/bioFAM/mofapy2.git /tmp/pip-req-build-llimfara did not run successfully. │ exit code: 128 ╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

willtownes commented 5 months ago

Sure, you can try a different version. I specified that commit in the paper because their package was under active development and it was the version I downloaded at that point in time. If you have trouble installing it I would recommend contacting the MEFISTO team directly.

yeswzc commented 5 months ago

I see. Thank you!