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willtownes / nsf-paper

Nonnegative spatial factorization for multivariate count data
GNU Lesser General Public License v3.0
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Dependency conflicts #7

Closed jadexq closed 6 months ago

jadexq commented 1 year ago

Thanks so much for the open source! I tried to run demo.ipynb but I was blocked by installing the dependencies. Specifically, the version of numpy (1.9.5) required by tensorflow 2.5.0 is conflicted with the version of numpy (~>1.23.5) required by other dependencies such as scanpy==1.8.0 and squidpy==1.1.0. Could you provide some instructions/comments on how to create a proper conda environment for running demo.ipynb? Thanks so much!!

willtownes commented 1 year ago

Sorry for the dependency frustrations. I was using pip but I lost the original environment in the migration to a new computer and a new university. So I tried to replicate it as best I could with mamba (faster version of conda). Let me know if this works, or if not, I can try some other stuff. Note this environment file does not include the mofapy2 dependency.

willtownes commented 6 months ago

closing due to inactivity