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wilsonlabgroup / scMappR

the scMappR developmental package
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Create Custom Gene Signature Matrix #2

Closed cnk113 closed 3 years ago

cnk113 commented 3 years ago

Hello,

I was wondering if was possible to create a custom gene sig matrix using my own clusters and annotations? Specifically I have already computed my marker genes per cell type, and would like to go from there. I noticed process_dgTMatrix goes from counts to signature matrix, but my cell types aren't annotated anywhere so it would be hard to use.

Thanks, Chang

cnk113 commented 3 years ago

Nevermind I got it working with the avg logfc as the matrix.