It appears that when a sequence contains termination stops in the middle of the sequence, the viewer is unable to display the alignment correctly, sometimes moving the sequence to a different row altogether. I am attaching an example of an alignment of some of our sequences using Clustal Omega. I set dropImport: true for MSAViewer. When I drop that file into the MSAViewer, you can see the problem.
It appears that when a sequence contains termination stops in the middle of the sequence, the viewer is unable to display the alignment correctly, sometimes moving the sequence to a different row altogether. I am attaching an example of an alignment of some of our sequences using Clustal Omega. I set dropImport: true for MSAViewer. When I drop that file into the MSAViewer, you can see the problem.
Thanks, Anna clustalo55297.aln.txt