FileNotFoundError: [Errno 2] No such file or directory: './data/mention/'

[cllinn]

I configured the annontation.json file of the data set and CheXbert, and successfully ran step0.1 without an error. However, I could not find the mention directory when running step0.2. I want to know which step I made the mistake in.

[wjhou]

Hi,

The files can be found at https://github.com/stanfordmlgroup/chexpert-labeler/tree/master/phrases/mention. Please also check #1.

I will upload these data later so that you may skip these data-preprocessing parts.

Best, Ethan

[cllinn]

Thank you very much for taking time out of your busy schedule to reply. It helps me a lot.

李春霖 @.***

 

------------------ 原始邮件 ------------------ 发件人: "wjhou/ORGan" @.>; 发送时间: 2024年1月3日(星期三) 下午4:36 @.>; @.>;"State @.>; 主题: Re: [wjhou/ORGan] FileNotFoundError: [Errno 2] No such file or directory: './data/mention/' (Issue #7)

Hi,

The files can be found at https://github.com/stanfordmlgroup/chexpert-labeler/tree/master/phrases/mention. Please also check #1.

I will upload these data later so that you may skip these data-preprocessing parts.

Best, Ethan

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you modified the open/close state.Message ID: @.***>

[wjhou]

Hi,

Sorry for the late response.

The date for the IU X-ray dataset has been uploaded into ./data/iu_xray/. As for the MIMIC-CXR dataset, the ngram file has also been uploaded into ./data/mimic_cxr/. However, I am unsure whether I can upload any data with an image_id, so you may have to extract other files (e.g., id2tag.csv) yourself.

Feel free to reopen this issue if you have other questions.

Best, Ethan