hi,
I encountered a new problem. My test reported an error in the 2Map_fq_to_Pan.py step. I tried to read the code and found that the _sorted_add_dedup.bam file was not generated normally.
My fq data was downloaded by myself and filtered by fastp, and I can indeed see the repeated content in the error through grep. It seems that it is the problem of my data, how should I deal with my data?
best wishes,
henry
hi, I encountered a new problem. My test reported an error in the 2Map_fq_to_Pan.py step. I tried to read the code and found that the _sorted_add_dedup.bam file was not generated normally.
My fq data was downloaded by myself and filtered by fastp, and I can indeed see the repeated content in the error through grep. It seems that it is the problem of my data, how should I deal with my data? best wishes, henry