wkumler / squallms

Repository for the Bioconductor squallms R package
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Add t-SNE, NMDS, UMAP, and CNN(?) as dimensionality reductions beyond PCA #8

Open wkumler opened 3 months ago

wkumler commented 3 months ago

PCA works well sometimes but doesn't actually optimize the problem that we'd like to solve - separating similar from dissimilar features. Some other methods might work better for their separation and are relatively easy to implement. A CNN could also work with a final layer projecting into two dimensions and might work reasonably well?