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wm75 / MIRACUM-Pipe

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alternative somatic variant callers #3

Open wm75 opened 5 years ago

wm75 commented 5 years ago

Strelka2 (Illumina) seems to be a promising alternative to varscan2. Mentioned in bcbio bcbio-nextgen issue 2345.

wm75 commented 5 years ago

Alternatives Vardict and GATK4's mutect2 seem less attractive at first glance.