Does DiffGR work with .cool files?

wmalab / DiffGR

Detecting differentially interacting genomic regions from Hi-C contact maps

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Does DiffGR work with .cool files? #5

Closed gdolsten closed 3 years ago

gdolsten commented 3 years ago

Very interesting work!

lhlruc commented 3 years ago

Sorry, we currently do not support the input for .cool files, you need to transform a .cool file to N*N Hi-C cis contact matrices for each chromosome as input.