wmayner
commented
7 years ago I can't guarantee that PyEMD will work with Anaconda. Try installing it into a fresh Python 3 virtualenv and see if the problem persists.
Closed wuxiaobo closed 7 years ago
wmayner
commented
7 years ago I can't guarantee that PyEMD will work with Anaconda. Try installing it into a fresh Python 3 virtualenv and see if the problem persists.
pip install pyemd Collecting pyemd Retrying (Retry(total=4, connect=None, read=None, redirect=None)) after connection broken by 'NewConnectionError('<pip._vendor.requebject at 0xf62b55cc>: Failed to establish a new connection: [Errno 101] Network is unreachable',)': /simple/pyemd/ Using cached pyemd-0.4.3.tar.gz Requirement already satisfied: numpy<2.0.0,>=1.9.0 in ./anaconda3/lib/python3.6/site-packages (from pyemd) Building wheels for collected packages: pyemd Running setup.py bdist_wheel for pyemd ... error Complete output from command /home/XXXXX/anaconda3/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-build-4hgf2w8e);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" bdist_wheel -d /tmp/tmp0g4l273wpip-wheel- -- running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/pyemd copying pyemd/about.py -> build/lib.linux-x86_64-3.6/pyemd copying pyemd/init__.py -> build/lib.linux-x86_64-3.6/pyemd running build_ext building 'pyemd.emd' extension creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/pyemd gcc -pthread -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/wuxiaobo/anaconda3/include/python3.6m -Iy/core/include -c pyemd/emd.cpp -o build/temp.linux-x86_64-3.6/pyemd/emd.o cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default] In file included from /home/XXXXX/anaconda3/include/python3.6m/Python.h:50:0, from pyemd/emd.cpp:16: /home/XXXXX/anaconda3/include/python3.6m/pyport.h:686:2: error: #error "LONG_BIT definition appears wrong for platform (bad gcc/g
error "LONG_BIT definition appears wrong for platform (bad gcc/glibc config?)."
In file included from /home/XXXXX/anaconda3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:0, from /home/XXXXX/anaconda3/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/XXXXX/anaconda3/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from pyemd/emd.cpp:467: /home/XXXXX/anaconda3/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Usin_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
warning "Using deprecated NumPy API, disable it by " \
error: command 'gcc' failed with exit status 1
Failed building wheel for pyemd Running setup.py clean for pyemd Failed to build pyemd Installing collected packages: pyemd Running setup.py install for pyemd ... error Complete output from command /home/XXXX/anaconda3/bin/python -u -c "import setuptools, tokenize;file='/tmp/pip-build-4hgf2ile);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-u3zpb6rz-record/compile: running install running build running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/pyemd copying pyemd/about.py -> build/lib.linux-x86_64-3.6/pyemd copying pyemd/init__.py -> build/lib.linux-x86_64-3.6/pyemd running build_ext building 'pyemd.emd' extension creating build/temp.linux-x86_64-3.6 creating build/temp.linux-x86_64-3.6/pyemd gcc -pthread -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/XXXXX/anaconda3/include/python3.6m mpy/core/include -c pyemd/emd.cpp -o build/temp.linux-x86_64-3.6/pyemd/emd.o cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default] In file included from /home/XXXXX/anaconda3/include/python3.6m/Python.h:50:0, from pyemd/emd.cpp:16: /home/XXXXX/anaconda3/include/python3.6m/pyport.h:686:2: error: #error "LONG_BIT definition appears wrong for platform (bad gcc
error "LONG_BIT definition appears wrong for platform (bad gcc/glibc config?)."