search

wmo-im / wmds

WIGOS Metadata Standard: Semantic standard and code tables
16 stars 22 forks source link

1-01-01 Add bioaerosol variables (pollen, fungi) #234

Closed fstuerzl closed 3 years ago

fstuerzl commented 3 years ago

Branch

Summary and Purpose

The table for observed variables does not contain any bioaerosol variables yet. It makes sense to include them in code list, to be able to provide metadata for e.g. pollen measurements in OSCAR/Surface.

Stakeholder(s)

Bernard Clot, MeteoSwiss Biometeorology team, DWD

Proposal

New categories: Bioaerosol: Pollen, Fungi

The tags for the new pollen and fungi variables represent the taxonomy by including the family as a subcategory.

path name description
\Atmosphere\Bioaerosol\Pollen\Total Pollen Total pollen All pollen taxa
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Total Pinaceae Total Pinaceae Pine family pollen
\Atmosphere\Bioaerosol\Pollen\Cupressaceae\Total Cupressaceae Total Cupressaceae Cypress family pollen
\Atmosphere\Bioaerosol\Pollen\Arecaceae\Total Arecaceae Total Arecaceae Palm family pollen
\Atmosphere\Bioaerosol\Pollen\Platanaceae\Platanus Platanus Plane tree pollen
\Atmosphere\Bioaerosol\Pollen\Urticaceae\Parietaria Parietaria Pellitory pollen
\Atmosphere\Bioaerosol\Pollen\Urticaceae\Urtica Urtica Nettle pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Castanea Castanea Sweet chesnut pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Fagus Fagus Beech pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Quercus Quercus Oak pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Total Betulaceae Total Betulaceae Birch family pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Alnus Alnus Alder pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Betula Betula Birch pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Carpinus Carpinus Hornbeam pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Corylus Corylus Hazel pollen
\Atmosphere\Bioaerosol\Pollen\Amaranthaceae\Total Amaranthaceae Total Amaranthaceae Amaranth family pollen
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Populus Populus Poplar pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Total Oleaceae Total Oleaceae Olive family pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Olea Olea Olive pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Fraxinus Fraxinus Ash pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Total Asteraceae Total Asteraceae Aster family pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Ambrosia Ambrosia Ragweed pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Artemisia Artemisia Mugwort pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Total Poaceae Total Poaceae Grasses pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Abies Abies Fir pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Picea Picea Spruce pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Larix Larix Larch pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Pinus Pinus Pine pollen
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Salix Salix Willow pollen
\Atmosphere\Bioaerosol\Pollen\Amaranthaceae\Chenopodium Chenopodium Chenopodium (goosefoot) pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Solidago Solidago Solidago (goldenrod) pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Secale Secale Secale pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Zea mays Zea mays Maize pollen
\Atmosphere\Bioaerosol\Pollen\Juglandaceae\Juglans Juglans Walnut tree pollen
\Atmosphere\Bioaerosol\Pollen\Ulmaceae\Ulmus Ulmus Elm pollen
\Atmosphere\Bioaerosol\Pollen\Sapindaceae\Acer Acer Maple pollen
\Atmosphere\Bioaerosol\Pollen\Sapindaceae\Aesculus Aesculus Aesculus pollen
\Atmosphere\Bioaerosol\Pollen\Brassicaceae\Brassica Brassica Brassica pollen
\Atmosphere\Bioaerosol\Pollen\Adoxaceae\Sambucus Sambucus Sambucus (elder) pollen
\Atmosphere\Bioaerosol\Pollen\Polygonaceae\Rumex Rumex Rumex (dock, sorrel) pollen
\Atmosphere\Bioaerosol\Pollen\Plantaginaceae\Plantago Plantago Plantain pollen
\Atmosphere\Bioaerosol\Pollen\Malvaceae\Tilia Tilia Linden pollen
\Atmosphere\Bioaerosol\Pollen\Cannabaceae\Humulus Humulus Hop pollen
\Atmosphere\Bioaerosol\Pollen\Taxaceae\Taxus Taxus Yew pollen
\Atmosphere\Bioaerosol\Pollen\Elaeagnaceae\Hippophae Hippophae Sea-buckthorn pollen
\Atmosphere\Bioaerosol\Pollen\Aquifoliaceae\Ilex Ilex Holly pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Ligustrum Ligustrum Privet pollen
\Atmosphere\Bioaerosol\Pollen\Juncaceae\Total Juncaceae Total Juncaceae Rush family pollen
\Atmosphere\Bioaerosol\Pollen\Cyperaceae\Total Cyperaceae Total Cyperaceae Sedge family pollen
\Atmosphere\Bioaerosol\Pollen\Ericaceae\Total Ericaceae Total Ericaceae Heather family pollen
\Atmosphere\Bioaerosol\Pollen\Rosaceae\Total Rosaceae Total Rosaceae Rose family pollen
\Atmosphere\Bioaerosol\Pollen\Caryophyllaceae\Silene Silene Melandrium pollen
\Atmosphere\Bioaerosol\Pollen\Ranunculaceae\Total Ranunculaceae Total Ranunculaceae Buttercup family pollen
\Atmosphere\Bioaerosol\Pollen\Umbelliferae\Total Umbelliferae Total Umbelliferae Celery, carrot or parsley family pollen
\Atmosphere\Bioaerosol\Pollen\Brassicaceae\Total Brassicaceae Total Brassicaceae Cabbage family (mustards, crucifers) pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Ostrya Ostrya Hophornbeam pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Cedrus Cedrus Cedar family pollen
\Atmosphere\Bioaerosol\Pollen\Buxaceae\Buxus Buxus Box pollen
\Atmosphere\Bioaerosol\Pollen\Ginkgoaceae\Ginkgo Ginkgo Ginkgo pollen
\Atmosphere\Bioaerosol\Pollen\Altingiaceae\Liquidambar Liquidambar Sweetgum pollen
\Atmosphere\Bioaerosol\Pollen\Euphorbiaceae\Mercurialis Mercurialis Mercuries pollen
\Atmosphere\Bioaerosol\Pollen\Moraceae\Total Moraceae Total Moraceae Mulberry family pollen
\Atmosphere\Bioaerosol\Fungi\Pleosporales\Alternaria Alternaria Alternaria spores
\Atmosphere\Bioaerosol\Fungi\Capnodiales\Cladosporium Cladosporium Cladosporium spores

Reason

The category of bioaerosol variables is missing in the WIGOS vocabulary. Adding those terms would also allow a mapping with variables in the Common Code Table C-14.

Old comment

Branch

Summary and Purpose The table for observed variables does not contain any bioaerosol variables yet. It makes sense to include them in code list, to be able to provide metadata for e.g. pollen measurements in OSCAR/Surface.

Stakeholder(s) Bernard Clot

Proposal New categories: \Atmosphere\Bioaerosol\Pollen... \Atmosphere\Bioaerosol\Fungi...

The paths for the new pollen and fungi variables represent the taxonomy as well a possible by including the family as a subcategory.

path name description
\Atmosphere\Bioaerosol\Pollen\Total Pollen Total pollen All pollen taxa
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Total Pinaceae Total Pinaceae Pine family pollen
\Atmosphere\Bioaerosol\Pollen\Cupressaceae\Total Cupressaceae Total Cupressaceae Cypress family pollen
\Atmosphere\Bioaerosol\Pollen\Taxaceae\Total Taxaceae Total Taxaceae Yew family pollen
\Atmosphere\Bioaerosol\Pollen\Arecaceae\Total Arecaceae Total Arecaceae Palm family pollen
\Atmosphere\Bioaerosol\Pollen\Platanaceae\Platanus Platanus Plane tree pollen
\Atmosphere\Bioaerosol\Pollen\Urticaceae\Parietaria Parietaria Pellitory pollen
\Atmosphere\Bioaerosol\Pollen\Urticaceae\Urtica Urtica Nettle pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Total Fagaceae Total Fagaceae Beech family pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Castanea Castanea Sweet chesnut pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Fagus Fagus Beech pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Quercus Quercus Oak pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Total Betulaceae Total Betulaceae Birch family pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Alnus Alnus Alder pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Betula Betula Birch pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Carpinus Carpinus Hornbeam pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Corylus Corylus Hazel pollen
\Atmosphere\Bioaerosol\Pollen\Amaranthaceae\Total Amaranthaceae Total Amaranthaceae Amaranth family pollen
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Total Salicaceae Total Salicaceae Willow family pollen
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Populus Populus Poplar pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Total Oleaceae Total Oleaceae Olive family pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Olea Olea Olive pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Fraxinus excelsior Fraxinus excelsior European ash pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Total Asteraceae Total Asteraceae Aster family pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Ambrosia Ambrosia Ragweed pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Artemisia Artemisia Mugwort pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Total Poaceae Total Poaceae Grasses pollen
 \Atmosphere\Bioaerosol\Fungi\Pleosporales\Alternaria Alternaria Alternaria spores
\Atmosphere\Bioaerosol\Fungi\Capnodiales\Cladosporium Cladosporium Cladosporium spores
amilan17 commented 3 years ago

Is there an established process for assigning notations to 1-01-01?

fstuerzl commented 3 years ago

@amilan17 the notations in the code table and the variable id in the OSCAR database are the same. Therefore we need to add the variables (provisionally) in OSCAR, where they get an id, and then assign this id as a notation in the proposal. I think it makes sense to wait with this until a proposal was confirmed by experts and is ready for the fast track, so that we don't add variables in OSCAR which need to be deleted later, because they were not accepted.

amilan17 commented 3 years ago

@RMaerz - will find someone to review this list

amilan17 commented 3 years ago

@ferrighi  - will find someone to review this list

ferrighi commented 3 years ago

I might have found a contact for review, but I think it is kind of difficult to review for them without guidelines. Do we want some feedback for completeness of this table, or more a review of consistency between name/description?

fstuerzl commented 3 years ago

@ferrighi, I think some comments on the following aspects would be helpful for us:

joergklausen commented 3 years ago

@ferrighi Thanks, what we need is actually both. I am confident that the list is already in fairly good shape, but a domain expert's perspective is most welcome. There are no strict guidelines I could give, I am afraid.

ferrighi commented 3 years ago

I have an update on this. Unfortunately the group I got in contact with is working with insect pollination, and cannot really help with this list, as they do not directly work with plants or air-pollinated species.

RMaerz commented 3 years ago

A first statement from our bio-met. section in Freiburg is expected next Tuesday

RMaerz commented 3 years ago

Received following response from our responsible team in Freiburg, if stakeholder Bernhard Clot agrees this could be integrated into the first draft:

\Atmosphere\Bioaerosol\Pollen\Pinaceae\Total Pinaceae Pinaceae can be differentiated up to genus, that means

\Atmosphere\Bioaerosol\Pollen\Pinaceae\Abies \Atmosphere\Bioaerosol\Pollen\Pinaceae\Picea \Atmosphere\Bioaerosol\Pollen\Pinaceae\Larix \Atmosphere\Bioaerosol\Pollen\Pinaceae\Pinus

The following are missing

\Atmosphere\Bioaerosol\Pollen\Salicaceae\Salix

\Atmosphere\Bioaerosol\Pollen\Amaranthaceae\Chenopodium

\Atmosphere\Bioaerosol\Pollen\Asteraceae\Solidago

\Atmosphere\Bioaerosol\Pollen\Poaceae\Secale \Atmosphere\Bioaerosol\Pollen\Poaceae\Zea mays

\Atmosphere\Bioaerosol\Pollen\Juglandaceae\Juglans

\Atmosphere\Bioaerosol\Pollen\Ulmaceae\Ulmus

\Atmosphere\Bioaerosol\Pollen\Sapindaceae\Acer \Atmosphere\Bioaerosol\Pollen\Sapindaceae\Aesculus

\Atmosphere\Bioaerosol\Pollen\Brassicaceae\Brassica

\Atmosphere\Bioaerosol\Pollen\Adoxaceae\Sambucus

\Atmosphere\Bioaerosol\Pollen\Polygonaceae\Rumex

\Atmosphere\Bioaerosol\Pollen\Plantaginaceae\Plantago

\Atmosphere\Bioaerosol\Pollen\Malvaceae\Tilia

\Atmosphere\Bioaerosol\Pollen\Cannabaceae\Humulus

The following could be removed, especially in the context, that pollen species belonging to the respective family can be differentiated up to genus or what is meant by these path specifications:

\Atmosphere\Bioaerosol\Pollen\Fagaceae\Total Fagaceae
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Total Betulaceae - could be removed if the genus Ostrya will be considered
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Total Salicaceae

For your information, the Netherlands analyze and differentiate the following pollen species https://www.lumc.nl/org/longziekten/patientenzorg/pollen-en-hooikoorts/pollentelling/

and Luxembourg: http://www.pollen.lu/index.php?qsPage=data&year=2021&week=0&qsLanguage=Fra

fstuerzl commented 3 years ago

Based on the feedback @RMaerz added in the comment above, I added the following variables to the branch:

Additions from DWD:

path name description
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Abies Abies Fir pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Picea Picea Spruce pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Larix Larix Larch pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Pinus Pinus Pine pollen
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Salix Salix Willow pollen
\Atmosphere\Bioaerosol\Pollen\Amaranthaceae\Chenopodium Chenopodium Chenopodium (goosefoot) pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Solidago Solidago Solidago (goldenrod) pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Secale Secale Secale pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Zea mays Zea mays Maize pollen
\Atmosphere\Bioaerosol\Pollen\Juglandaceae\Juglans Juglans Walnut tree pollen
\Atmosphere\Bioaerosol\Pollen\Ulmaceae\Ulmus Ulmus Elm pollen
\Atmosphere\Bioaerosol\Pollen\Sapindaceae\Acer Acer Maple pollen
\Atmosphere\Bioaerosol\Pollen\Sapindaceae\Aesculus Aesculus Aesculus pollen
\Atmosphere\Bioaerosol\Pollen\Brassicaceae\Brassica Brassica Brassica pollen
\Atmosphere\Bioaerosol\Pollen\Adoxaceae\Sambucus Sambucus Sambucus (elder) pollen
\Atmosphere\Bioaerosol\Pollen\Polygonaceae\Rumex Rumex Rumex (dock, sorrel) pollen
\Atmosphere\Bioaerosol\Pollen\Plantaginaceae\Plantago Plantago Plantain pollen
\Atmosphere\Bioaerosol\Pollen\Malvaceae\Tilia Tilia Linden pollen
\Atmosphere\Bioaerosol\Pollen\Cannabaceae\Humulus Humulus Hop pollen

Additions of pollen variables from LUMC, pollen.lu, Common Code table C-14 and the Pollen monitoring network at MeteoSwiss:

path name description
\Atmosphere\Bioaerosol\Pollen\Taxaceae\Taxus Taxus Yew pollen
\Atmosphere\Bioaerosol\Pollen\Elaeagnaceae\Hippophae Hippophae Sea-buckthorn pollen
\Atmosphere\Bioaerosol\Pollen\Aquifoliaceae\Ilex Ilex Holly pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Ligustrum Ligustrum Privet pollen
\Atmosphere\Bioaerosol\Pollen\Juncaceae\Total Juncaceae Total Juncaceae Rush family pollen
\Atmosphere\Bioaerosol\Pollen\Cyperaceae\Total Cyperaceae Total Cyperaceae Sedge family pollen
\Atmosphere\Bioaerosol\Pollen\Ericaceae\Total Ericaceae Total Ericaceae Heather family pollen
\Atmosphere\Bioaerosol\Pollen\Rosaceae\Total Rosaceae Total Rosaceae Rose family pollen
\Atmosphere\Bioaerosol\Pollen\Caryophyllaceae\Silene Silene Melandrium pollen
\Atmosphere\Bioaerosol\Pollen\Ranunculaceae\Total Ranunculaceae Total Ranunculaceae Buttercup family pollen
\Atmosphere\Bioaerosol\Pollen\Umbelliferae\Total Umbelliferae Total Umbelliferae Celery, carrot or parsley family pollen
\Atmosphere\Bioaerosol\Pollen\Brassicaceae\Total Brassicaceae Total Brassicaceae Cabbage family (mustards, crucifers) pollen
\Atmosphere\Bioaerosol\Pollen\Rosaceae\Filipendula Filipendula Filipendula pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Ostrya Ostrya Hophornbeam pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Cedrus Cedrus Cedar family pollen
\Atmosphere\Bioaerosol\Pollen\Buxaceae\Buxus Buxus Box pollen
\Atmosphere\Bioaerosol\Pollen\Ginkgoaceae\Ginkgo Ginkgo Ginkgo pollen
\Atmosphere\Bioaerosol\Pollen\Altingiaceae\Liquidambar Liquidambar Sweetgum pollen
\Atmosphere\Bioaerosol\Pollen\Euphorbiaceae\Mercurialis Mercurialis Mercuries pollen
\Atmosphere\Bioaerosol\Pollen\Moraceae\Total Moraceae Total Moraceae Mulberry family pollen

Regarding the removal of the following terms, the important question is, whether there are measurements of for example beech family pollen, which don't distinguish between the genera. If yes, it makes sense to keep "Total Fagaceae" as the observed variable for the entire family. If not, I agree, that the term should be removed.

fstuerzl commented 3 years ago

Feedback from Bernard Clot:

Dear Franziska,

From my point of view, the additions are ok. The first list intended only to suggest a structure for the database, providing some typical examples from Europe. The question is: what is the goal, where should we stop, do we intend to list all the possible pollen types that can be found in the air? Such a list can be as long as the list of plants… in the present document, we have proposals from central-western Europe, one could easily add hundreds of taxa if considering other areas of the world. My suggestion would be to limit the list to pollen types that have a certain importance/impact (abundance, allergenicity, etc.) over large areas in relation with the capacity to monitor their airborne concentrations and the use of the data. It might not be the case for some of the additional taxa proposed. However, defining this “short list” would require precise criteria. In a pragmatic attempt, we could in some cases, stay at the family level.

Open for discussion.

Kind regards, Bernard

RMaerz commented 3 years ago

additions were again reviewed by Endler Christina cendler@exch.dwd.de and Smukalla Renate rsmukall@exch.dwd.de with latest comments (formatted in red ...):

pollen_variables_Review_DWD_20210504.xlsx

As I'm not a biologist stakeholder or others with specific knowledge have to decide

sebvi commented 3 years ago

Will this list be crosschecked with what we have in Common Code Table 14? see https://github.com/wmo-im/CCT/blob/master/C14.csv, entries from 62100 to end.

If necessary, should we establish a merged list and implement it both here and in CCT14?

fstuerzl commented 3 years ago

Thanks for your comment @sebvi. The file @RMaerz uploaded also contains a mapping with all pollen variables of CCT-14,. The variables from this table were actually the starting point from which the list above was developed.

pollen_variables_Review_DWD_20210504.xlsx

sebvi commented 3 years ago

@fstuerzl this is great! Once the list is reviewed and consolidated we may want to open an issue in https://github.com/wmo-im/CCT to keep both lists in sync.

fstuerzl commented 3 years ago

Branch updated according to DWD remarks: https://github.com/wmo-im/wmds/blob/Issue234/tables_en/1-01-01.csv

fstuerzl commented 3 years ago

Consolidated proposal:

Branch

Summary and Purpose The table for observed variables does not contain any bioaerosol variables yet. It makes sense to include them in code list, to be able to provide metadata for e.g. pollen measurements in OSCAR/Surface.

Stakeholder(s) Bernard Clot, MeteoSwiss Biometeorology team, DWD

Proposal New categories: \Atmosphere\Bioaerosol\Pollen... \Atmosphere\Bioaerosol\Fungi...

The paths for the new pollen and fungi variables represent the taxonomy as well a possible by including the family as a subcategory.

path name description
\Atmosphere\Bioaerosol\Pollen\Total Pollen Total pollen All pollen taxa
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Total Pinaceae Total Pinaceae Pine family pollen
\Atmosphere\Bioaerosol\Pollen\Cupressaceae\Total Cupressaceae Total Cupressaceae Cypress family pollen
\Atmosphere\Bioaerosol\Pollen\Arecaceae\Total Arecaceae Total Arecaceae Palm family pollen
\Atmosphere\Bioaerosol\Pollen\Platanaceae\Platanus Platanus Plane tree pollen
\Atmosphere\Bioaerosol\Pollen\Urticaceae\Parietaria Parietaria Pellitory pollen
\Atmosphere\Bioaerosol\Pollen\Urticaceae\Urtica Urtica Nettle pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Castanea Castanea Sweet chesnut pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Fagus Fagus Beech pollen
\Atmosphere\Bioaerosol\Pollen\Fagaceae\Quercus Quercus Oak pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Total Betulaceae Total Betulaceae Birch family pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Alnus Alnus Alder pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Betula Betula Birch pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Carpinus Carpinus Hornbeam pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Corylus Corylus Hazel pollen
\Atmosphere\Bioaerosol\Pollen\Amaranthaceae\Total Amaranthaceae Total Amaranthaceae Amaranth family pollen
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Populus Populus Poplar pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Total Oleaceae Total Oleaceae Olive family pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Olea Olea Olive pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Fraxinus Fraxinus Ash pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Total Asteraceae Total Asteraceae Aster family pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Ambrosia Ambrosia Ragweed pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Artemisia Artemisia Mugwort pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Total Poaceae Total Poaceae Grasses pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Abies Abies Fir pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Picea Picea Spruce pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Larix Larix Larch pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Pinus Pinus Pine pollen
\Atmosphere\Bioaerosol\Pollen\Salicaceae\Salix Salix Willow pollen
\Atmosphere\Bioaerosol\Pollen\Amaranthaceae\Chenopodium Chenopodium Chenopodium (goosefoot) pollen
\Atmosphere\Bioaerosol\Pollen\Asteraceae\Solidago Solidago Solidago (goldenrod) pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Secale Secale Secale pollen
\Atmosphere\Bioaerosol\Pollen\Poaceae\Zea mays Zea mays Maize pollen
\Atmosphere\Bioaerosol\Pollen\Juglandaceae\Juglans Juglans Walnut tree pollen
\Atmosphere\Bioaerosol\Pollen\Ulmaceae\Ulmus Ulmus Elm pollen
\Atmosphere\Bioaerosol\Pollen\Sapindaceae\Acer Acer Maple pollen
\Atmosphere\Bioaerosol\Pollen\Sapindaceae\Aesculus Aesculus Aesculus pollen
\Atmosphere\Bioaerosol\Pollen\Brassicaceae\Brassica Brassica Brassica pollen
\Atmosphere\Bioaerosol\Pollen\Adoxaceae\Sambucus Sambucus Sambucus (elder) pollen
\Atmosphere\Bioaerosol\Pollen\Polygonaceae\Rumex Rumex Rumex (dock, sorrel) pollen
\Atmosphere\Bioaerosol\Pollen\Plantaginaceae\Plantago Plantago Plantain pollen
\Atmosphere\Bioaerosol\Pollen\Malvaceae\Tilia Tilia Linden pollen
\Atmosphere\Bioaerosol\Pollen\Cannabaceae\Humulus Humulus Hop pollen
\Atmosphere\Bioaerosol\Pollen\Taxaceae\Taxus Taxus Yew pollen
\Atmosphere\Bioaerosol\Pollen\Elaeagnaceae\Hippophae Hippophae Sea-buckthorn pollen
\Atmosphere\Bioaerosol\Pollen\Aquifoliaceae\Ilex Ilex Holly pollen
\Atmosphere\Bioaerosol\Pollen\Oleaceae\Ligustrum Ligustrum Privet pollen
\Atmosphere\Bioaerosol\Pollen\Juncaceae\Total Juncaceae Total Juncaceae Rush family pollen
\Atmosphere\Bioaerosol\Pollen\Cyperaceae\Total Cyperaceae Total Cyperaceae Sedge family pollen
\Atmosphere\Bioaerosol\Pollen\Ericaceae\Total Ericaceae Total Ericaceae Heather family pollen
\Atmosphere\Bioaerosol\Pollen\Rosaceae\Total Rosaceae Total Rosaceae Rose family pollen
\Atmosphere\Bioaerosol\Pollen\Caryophyllaceae\Silene Silene Melandrium pollen
\Atmosphere\Bioaerosol\Pollen\Ranunculaceae\Total Ranunculaceae Total Ranunculaceae Buttercup family pollen
\Atmosphere\Bioaerosol\Pollen\Umbelliferae\Total Umbelliferae Total Umbelliferae Celery, carrot or parsley family pollen
\Atmosphere\Bioaerosol\Pollen\Brassicaceae\Total Brassicaceae Total Brassicaceae Cabbage family (mustards, crucifers) pollen
\Atmosphere\Bioaerosol\Pollen\Betulaceae\Ostrya Ostrya Hophornbeam pollen
\Atmosphere\Bioaerosol\Pollen\Pinaceae\Cedrus Cedrus Cedar family pollen
\Atmosphere\Bioaerosol\Pollen\Buxaceae\Buxus Buxus Box pollen
\Atmosphere\Bioaerosol\Pollen\Ginkgoaceae\Ginkgo Ginkgo Ginkgo pollen
\Atmosphere\Bioaerosol\Pollen\Altingiaceae\Liquidambar Liquidambar Sweetgum pollen
\Atmosphere\Bioaerosol\Pollen\Euphorbiaceae\Mercurialis Mercurialis Mercuries pollen
\Atmosphere\Bioaerosol\Pollen\Moraceae\Total Moraceae Total Moraceae Mulberry family pollen
\Atmosphere\Bioaerosol\Fungi\Pleosporales\Alternaria Alternaria Alternaria spores
\Atmosphere\Bioaerosol\Fungi\Capnodiales\Cladosporium Cladosporium Cladosporium spores
joergklausen commented 3 years ago

@ferrighi @RMaerz Please confirm proposal.

ferrighi commented 3 years ago

@fstuerzl I don't seem to find a confirmation about the removal of:

only a confirmation about the additions.

fstuerzl commented 3 years ago

@ferrighi, this was proposed by DWD in the file, which @RMaerz uploaded recently:

additions were again reviewed by Endler Christina cendler@exch.dwd.de and Smukalla Renate rsmukall@exch.dwd.de with latest comments (formatted in red ...):

pollen_variables_Review_DWD_20210504.xlsx

As I'm not a biologist stakeholder or others with specific knowledge have to decide

and in https://github.com/wmo-im/wmds/issues/234#issuecomment-805746303.

To summarise:

name comment
Total Fagaceae from DWD point of view yes, this can be removed because all genera are clearly distinguishable (Fagus, Quercus, Castanea). Or which pollen should be addressed here?
Total Salicaceae from DWD point of view yes, this can be removed because the both genera Populus and Salix are clearly distinguishable
Total Betulaceae could be removed if the genus Ostrya will be considered
ferrighi commented 3 years ago

Good @fstuerzl then I think we are ready to proceed with this. The proposal seems to be in line with requests and review.

joergklausen commented 3 years ago

Since the path is not part of the codes.wmo.int/wmdr registry, but tags have been proposed as an alternative, should these tags now be included in the branch? Specifically, bioaerosol for all entries, pollen and fungi where applicable.

Other than that, I recommend the issue to be promoted to 'validated'.

ferrighi commented 3 years ago

Agree, so Atmosphere as implicit domain, but for the tags for example: \Atmosphere\Bioaerosol\Pollen\Oleaceae\Olea name: Olea Tag: [Bioaerosols, Pollen] or [Bioaerosols, Pollen, Oleaceae] ?

fstuerzl commented 3 years ago

@ferrighi I think, we need to have "Bioaerosols, Pollen, Oleaceae" as tags, otherwise we lose the biological taxonomy. I'll make the change from paths to tags later. In this case they are unambiguous, so the tags don't contain more information than the paths.

joergklausen commented 3 years ago

Team agreed to include all parts of the path as tags, then move to 'validated'. @fstuerzl @ferrighi please confirm once done.

fstuerzl commented 3 years ago

Paths replaced by tags: https://github.com/wmo-im/wmds/compare/Issue234

ferrighi commented 3 years ago

@joergklausen moved to validated now.