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wodanaz / Assembling_viruses

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Look into containerizing the pipeline #23

Open johnbradley opened 3 years ago

johnbradley commented 3 years ago

To improve reproducibility look into creating a container with the required software.

johnbradley commented 3 years ago

Snakemake has an option to generate a container for the pipeline

snakemake --containerize > Dockerfile

https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#containerization-of-conda-based-workflows

wodanaz commented 3 years ago

Wow!!!! that is simply fantastic