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Simplify running individual scripts
#32
Closed
johnbradley
closed
3 years ago
johnbradley
commented
3 years ago
Changes the pipeline scripts to use an intermediate data directory based on an environment variable named
EVDIR
.
Adds comments documenting required arguments and environment variables for scripts used in the pipeline.
Fixes a bug in the compiler perl scripts to remove path from a column name.
Adds Debugging.md document with instructions on how to run a single script.
Removes no longer used fix-merged-bed-positions.sh script
Fixes #25 Fixes #31 Fixes #19
Fixes #25 Fixes #31 Fixes #19