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wodanaz / Assembling_viruses

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Adds config.sh and remove hard coded tmpdir #44

Closed johnbradley closed 3 years ago

johnbradley commented 3 years ago

Adds code to read a config shell script config.sh. Users should copy example-config.sh to config.sh to setup the config file. The example-config.sh contains SBATCH_ACCOUNT with the appropriate account. Any of the Slurm sbatch input environment variables could be exported in config.sh.

Replaces hard coded /data/covid19lab/tmp directory with $EVDIR.

Fixes a bug where an extra quote was added to create-spreadsheet.py.