Simplify run scripts - Githubissues

wodanaz / Assembling_viruses

0 stars 0 forks source link

Simplify run scripts #52

Closed johnbradley closed 3 years ago

johnbradley commented 3 years ago

Simplify run scripts

Merge the two run*-escape-variant.sh scripts into one with options to skip the downloading and uploading steps.
Replace the run modes with "duke" and "nc_state". Both these modes will use the logic of the campus mode.
Make the datetab file a required input.