wodanaz / Assembling_viruses

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Switch to Snakemake #67

Closed johnbradley closed 2 years ago

johnbradley commented 2 years ago

Changes workflow to use snakemake when running the pipeline. Fixes #46

Simplifies the workflow: Removing mode argument, date.tab requirement, removes unnecessary check, compress log files. Fixes #64 Fixes #62 Fixes #63 Fixes #66

Adds support for running on azure Fixes #59