If the FASTQ files are not in the root directory of a DDS project a MissingOutputException error occurs during the Remove Nextera Adapters step. This problem will also occur without DDS if the FASTQ are in a subdirectory for the project's input directory.
If the FASTQ files are not in the root directory of a DDS project a MissingOutputException error occurs during the
Remove Nextera Adaptersstep. This problem will also occur without DDS if the FASTQ are in a subdirectory for the project's input directory.