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PySpots
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Bump werkzeug from 2.0.2 to 2.2.3
#40
dependabot[bot]
opened
1 year ago
0
Bump ipython from 7.30.0 to 8.10.0
#39
dependabot[bot]
opened
1 year ago
0
Bump oauthlib from 3.1.1 to 3.2.2
#38
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2021.10.8 to 2022.12.7
#37
dependabot[bot]
opened
1 year ago
0
Bump pillow from 8.4.0 to 9.3.0
#36
dependabot[bot]
opened
1 year ago
0
Bump tensorflow-gpu from 2.7.0 to 2.9.3
#35
dependabot[bot]
opened
1 year ago
0
Bump protobuf from 3.19.1 to 3.19.5
#34
dependabot[bot]
opened
2 years ago
0
Bump oauthlib from 3.1.1 to 3.2.1
#33
dependabot[bot]
closed
1 year ago
1
Bump tensorflow-gpu from 2.7.0 to 2.7.2
#32
dependabot[bot]
closed
1 year ago
1
Add Registration to Nuclear Channel
#31
zehemminger
opened
2 years ago
0
Bump pillow from 8.4.0 to 9.0.1
#30
dependabot[bot]
closed
1 year ago
1
Counts table and metadata shapes dont match likely label 0 included
#29
zehemminger
opened
2 years ago
0
Bump tensorflow-gpu from 2.7.0 to 2.8.0
#28
dependabot[bot]
closed
2 years ago
1
Bump tensorflow-gpu from 2.7.0 to 2.7.1
#27
dependabot[bot]
closed
2 years ago
1
Bump ipython from 7.30.0 to 7.31.1
#26
dependabot[bot]
closed
1 year ago
1
Add Executable to process all registration objects for a dataset starting with hybe 1 without daemons
#25
zehemminger
closed
2 years ago
1
Flags are slowing down analysis
#24
zehemminger
closed
2 years ago
0
verify progress bar fixes read write limit
#23
zehemminger
closed
2 years ago
0
Add Quality Metrics to Dataset Class
#22
zehemminger
opened
2 years ago
0
Save Counts as anndata as well as npy
#21
zehemminger
opened
2 years ago
1
Save Transcripts, Counts, and Cell Metadata to /metadata/Results/
#20
zehemminger
opened
2 years ago
1
fix double posname in cell_metadata
#19
zehemminger
closed
2 years ago
0
Add stage coordinates to cell_metadata and transcripts
#18
zehemminger
opened
2 years ago
0
move hard coded registration tp.locate parameters to config file
#17
zehemminger
closed
2 years ago
0
Bump pillow from 8.4.0 to 9.0.0
#16
dependabot[bot]
closed
2 years ago
1
Add Redundancy to Registration Class
#15
zehemminger
opened
2 years ago
0
Add Error Out to Classify if no transcripts detected
#14
zehemminger
closed
2 years ago
0
Add Error To Image Class for no Spots
#13
zehemminger
closed
2 years ago
0
update cell segmentation to include poly A signal
#12
zehemminger
opened
2 years ago
0
Spot based Registration picks up more than just beads especially when there is a slight nuclear stain present
#11
zehemminger
closed
2 years ago
0
Add JSTA to PYSPOTS
#10
zehemminger
opened
2 years ago
0
Gererate Counts in Dataset
#9
zehemminger
closed
2 years ago
0
Add logistic regressor to Dataset
#8
zehemminger
closed
2 years ago
0
Positions should create Classify for each Zindex
#7
zehemminger
closed
2 years ago
0
update classify daemon
#6
zehemminger
closed
2 years ago
0
Add SLACK Error Reporting To Alert Users
#5
zehemminger
closed
2 years ago
0
consolidate loading bar function
#4
zehemminger
closed
2 years ago
0
Implement Classification Class with Spots
#3
zehemminger
closed
2 years ago
0
Add Spotcalling to Image Class
#2
zehemminger
closed
2 years ago
0
Move Flag Checking to its own class
#1
zehemminger
closed
2 years ago
0