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wombat-p / OpenMS-ProteomicsLFQ

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Clarify how we want to collect results #2

Open julianu opened 3 years ago

julianu commented 3 years ago

This does not only apply to this repo, but rather to all our pipelines: Do we want to collect results of only one default dataset, or also of other datasets?

For the default datasets: let's add something to the readme, which parameters should be kept and which can change (I needed to adjust the RAM a bit as my VM at hand only had 64GB and not 128GB right now ;) )

For other datasets: maybe create a sub-folder for these and make a clear naming mandatory, like the PXD... number? Otherwise: I would like to test the workflow on a not-yet-published dataset as well... then maybe just make it easy to find a describing file or a mandatory SDRF?

veitveit commented 3 years ago

This is an important point as we want to run more data sets.

I opt for datasets specific folders using the PXD ID. For other data sets, would SDRF + database be enough?