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workflow4metabolomics / mtbls-dwnld

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Failure when specifying `-T` with absolute path for output (`-o`). #45

Closed pkrog closed 6 years ago

pkrog commented 6 years ago 
2018-06-30 14:51:31 (1.85 MB/s) - ‘/var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/MTBLS164.zip’ saved [1649833]

[DEBUG] as_folder(/var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/MTBLS164.zip, /var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T
/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea)
[DEBUG] Unzipping file "/var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/MTBLS164.zip".
[DEBUG] Unzipping into "/var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea".
[DEBUG] Zipped file is "/var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/MTBLS164.zip".
[DEBUG] Output directory will be "/var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea".
[DEBUG] Current directory is "/Users/pierrick/dev/mtbls-dwnld/test".
unzip:  cannot find or open /Users/pierrick/dev/mtbls-dwnld/test//var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/MTBLS164.zip, /Users/pierrick/dev/mtbls-dwnld/test//var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/MTBLS164.zip.zip or /Users/pierrick/dev/mtbls-dwnld/test//var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/MTBLS164.zip.ZIP.
ERROR: Unable to unzip archive /Users/pierrick/dev/mtbls-dwnld/test//var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/MTBLS164.zip.
262 test_wget_temp_in_abs_output test-mtbls-dwnld.sh
131 test_that ../bash-testthat/testthat.sh
310 source test-mtbls-dwnld.sh
857 main ../bash-testthat/testthat.sh
"/var/folders/7d/w7hn4fxs0158ttnq01yl665m0000gn/T/test-mtbls-dwnld.sh_MTBLS164_output.XXXXXX.lpJvBqea/i_Investigation.txt" does not exist or is not a file.