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workflow4metabolomics / tools-metabolomics

Galaxy tools for metabolomics maintained by Workflow4Metabolomics
https://workflow4metabolomics.org/
GNU General Public License v3.0
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findChromPeaks Merger with "bad " samplenames format auto correction #183

Open yguitton opened 4 years ago

yguitton commented 4 years ago

Hi,

in xcms findChromPeaks Merger Merge xcms findChromPeaks RData into a unique file to be used by group (Galaxy Version 3.6.1+galaxy0)

in that tool if we use a sampleMetadata.tsv created by check format or xcms get a sampleMetadata file which need to be filled with extra information (Galaxy Version 3.6.1+galaxy0) we do have X added or . in the names and that is not accepted by the tool but should be "easily" auto corrected by the tool so that we can both work with file names like 20180727-033 or X20180727.033

many thanks Yann

yguitton commented 3 years ago

Hi,

I add the same issue with xcms plot chromatogram. Can someone help me to enhance that? I think we can use the "Make syntactically valid sample and variable names" from Quality Metric

Thanks Yann