Exporting a peak table in xcms.group - Githubissues

workflow4metabolomics / tools-metabolomics

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

https://workflow4metabolomics.org/

GNU General Public License v3.0

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Exporting a peak table in xcms.group #35

Closed melpetera closed 7 years ago

melpetera commented 7 years ago

The idea is to do the same as decided in #23 for fillpeaks, this time for group module.

lecorguille commented 7 years ago

From xcms.group 2.1.0

lecorguille commented 7 years ago

docker run -d -p 8080:80 quay.io/workflow4metabolomics/galaxy-workflow4metabolomics:beta

lecorguille commented 7 years ago

Available within the dev galaxy instance

melpetera commented 7 years ago

Tested on dev galaxy instance. Works well! Ok for me.

lecorguille commented 7 years ago

[x] validated by @melpetera
[x] validated by @yguitton
[ ] validated by @jfrancoismartin

melpetera commented 7 years ago

Didn't notice before but the output names are "fillpeak"ed!

lecorguille commented 7 years ago

@melpetera Indeed, thanks!

lecorguille commented 7 years ago

Fix: https://github.com/workflow4metabolomics/xcms/commit/b8ea02b3d37550c33dcf8e099fe8c636287b0865 And push to the dev

melpetera commented 7 years ago

And validated. Ok for me.

lecorguille commented 7 years ago

Thanks