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workflow4metabolomics / tools-metabolomics

Galaxy tools for metabolomics maintained by Workflow4Metabolomics
https://workflow4metabolomics.org/
GNU General Public License v3.0
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TIC/BPC - plot relative intensity #88

Open lecorguille opened 6 years ago

lecorguille commented 6 years ago

A request we had:

Hi, Is there a way to plot relative intensity on y axis in the BPC and TICs generated from xcmsSet, rather than total intensity?

lecorguille commented 6 years ago

Ping @RomainDallet

yguitton commented 6 years ago

That will not change anything... But can be cool

Le mar. 20 mars 2018 04:57, Gildas Le Corguillé notifications@github.com a écrit :

A request we had:

Hi, Is there a way to plot relative intensity on y axis in the BPC and TICs generated from xcmsSet, rather than total intensity?

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waleadebayo commented 6 years ago

How about specifying EICs plot or get peak integration area for specific m/z?

yguitton commented 5 years ago

Hi again a request from S Chéreau OTRS [Ticket#2018110710000012 — Requests on XCMS.]

Plot.chromatogram :Is it possible to implement other parameters of "chromatogram" function to generate a particular EIC of interest (described here https://bioconductor.org/packages/devel/bioc/vignettes/xcms/inst/doc/xcms.html#4_chromatographic_peak_detection). To go further, the possibility of generating a set of different EICs based on their relevance (let say possible biomarkers etc.) may be helpful to check for chromatographic behaviour.

Looking forward to hearing from you, Best, Sylvain