Build does *not* fail on mzR - Githubissues

workflow4metabolomics / w4m-vm

Virtual machine for Workflow4Metabolomics Galaxy platform.

http://workflow4metabolomics.org/

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Build does not fail on mzR #4

Closed sneumann closed 8 years ago

sneumann commented 8 years ago

Hi, in https://hub.docker.com/r/lecorguille/galaxy-workflow4metabolomics/builds/bex55xgwjaageqeuggt92sn/ I don't see a failure due to mzR (or it didn't reach that step yet ?!). There is * The PostgreSQL server failed to start. Please check the log output:``` and galaxy fails withOperationalError: (psycopg2.OperationalError) could not connect to server: Connection refused````. We have a working bioconductor_metabolomics docker at http://phenomenal-h2020.eu/jenkins/job/bioc_docker_devel_metabolomics/11/ . Yours, Steffen

lecorguille commented 8 years ago

It is not more a problem since I use now conda dependencies I wrote in our new (this week) different VM (Vagrant and Docker) http://bioconda.github.io/recipes/bioconductor-xcms/README.html http://bioconda.github.io/recipes/bioconductor-camera/README.html