(.venv) (base) beacon@2023BH01:~/workflow$ galaxy2cwl Somatic-Variant-Discovery-from-WES-Data-Using-Control-FREEC.ga > somatic_corkflow.cwl
Traceback (most recent call last):
File "/home/beacon/.venv/bin/galaxy2cwl", line 8, in
sys.exit(main())
File "/home/beacon/.venv/lib/python3.8/site-packages/galaxy2cwl/get_cwl_interface.py", line 287, in main
cwl_out = process_format1_json(wf_dict)
File "/home/beacon/.venv/lib/python3.8/site-packages/galaxy2cwl/get_cwl_interface.py", line 78, in process_format1_json
source_output_name = sanitize_source(input_details['output_name'])
TypeError: list indices must be integers or slices, not str
(.venv) (base) beacon@2023BH01:~/workflow$ galaxy2cwl Somatic-Variant-Discovery-from-WES-Data-Using-Control-FREEC.ga > somatic_corkflow.cwl Traceback (most recent call last): File "/home/beacon/.venv/bin/galaxy2cwl", line 8, in
sys.exit(main())
File "/home/beacon/.venv/lib/python3.8/site-packages/galaxy2cwl/get_cwl_interface.py", line 287, in main
cwl_out = process_format1_json(wf_dict)
File "/home/beacon/.venv/lib/python3.8/site-packages/galaxy2cwl/get_cwl_interface.py", line 78, in process_format1_json
source_output_name = sanitize_source(input_details['output_name'])
TypeError: list indices must be integers or slices, not str