workflowhub-eu workflowhub-graph issues

workflowhub-eu / workflowhub-graph

Knowledge Graph generator for WorkflowHub

BSD 2-Clause "Simplified" License

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check doc from WP2 and make corresponding GitHub issues for data quality/cleaning phase. THEN look at some of them!

#48 volodymyrss opened 1 month ago
0
Refactor RO Crate

#47 alexhambley closed 2 months ago
0
Test multiple context urls

#46 volodymyrss closed 2 months ago
0
remove duplicated registry name

#45 volodymyrss closed 2 months ago
0
remove duplicated registry name

#44 volodymyrss closed 3 months ago
1
Document how the knowledge graph can be instantiated

#43 stain opened 3 months ago
0
Refactored Snakemake workflow and generate example output

#42 alexhambley closed 3 months ago
0
Refactored Snakemake workflow and generate example output

#41 alexhambley closed 3 months ago
0
Update ReadMe to reflect architecture + example use case for ttl file

#40 alexhambley closed 2 months ago
0
Update RO crate to better fit workflow profile

#39 alexhambley closed 2 months ago
0
Add snakemake diagram

#38 stain opened 3 months ago
0
Automatically create RO Crate for ESG workflow to upload to WorkflowHub

#37 alexhambley closed 3 months ago
0
Updata diagram from workflow

#36 stain opened 3 months ago
0
Register as workflow on WorkflowHub

#35 stain opened 3 months ago
2
Some RO Crates raise a ValueError if there are multiple context URLs

#34 alexhambley closed 2 months ago
2
Develop CLI to show progress whilst downloading

#33 alexhambley closed 3 months ago
0
Extract toolshed identifiers from Galaxy workflows

#32 stain opened 4 months ago
1
Data cleaning for license identifiers

#31 stain opened 4 months ago
0
Merge local identifiers for workflow language

#30 stain opened 4 months ago
0
Ability to reconstruct each RO-Crate using named graphs

#29 stain opened 4 months ago
0
Add CLI Parameter Input for Snakemake Workflow

#28 alexhambley closed 3 months ago
0
Ensure https links back to WorkflowHub per RO-Crate

#27 stain opened 5 months ago
0
Zip endpoint for crate sourcing should have configurable URL

#26 alexhambley opened 5 months ago
0
Refactor SPARQL directory

#25 alexhambley opened 5 months ago
0
Add Snakemake workflow

#24 alexhambley closed 5 months ago
0
Generate list of expected outputs for dependancy management in Snakemake

#23 alexhambley closed 4 months ago
0
Feature docker container

#22 OliverWoolland closed 5 months ago
0
Rebase on latest

#21 OliverWoolland closed 5 months ago
0
Flag added to control downloading of all versions of RO Crates, or only latest version

#20 alexhambley closed 5 months ago
0
Create container to provide executable environment

#19 OliverWoolland closed 5 months ago
0
Create workflow to automate graph generation

#18 OliverWoolland closed 5 months ago
1
Refactor Crate Sourcing to Flag When Run as Workflow

#17 alexhambley closed 3 months ago
0
Add Logic to Download Crates Updated in Last X Days

#16 alexhambley closed 1 week ago
1
Add Logic to Determine Whether to Download All Crates or Only the Most Recent Crate

#15 alexhambley closed 5 months ago
0
do we need a short note on which development flow would be used?

#14 volodymyrss closed 5 months ago
2
Jmf sparql queries

#13 stain closed 5 months ago
0
Validation to find (in)consistencies in data

#12 stain opened 5 months ago
0
Implement use of rdflib for parsing

#11 stain closed 5 months ago
0
Add docker compose to support local development

#10 OliverWoolland opened 5 months ago
1
Investigate the suitability of Ontospy / alternatives

#9 OliverWoolland closed 5 months ago
4
Create GitHub Action for triggering data collection / ingestion

#8 OliverWoolland closed 3 months ago
0
Investigate base URI handling

#7 OliverWoolland closed 5 months ago
1
Add example SPARQL queries

#6 OliverWoolland closed 5 months ago
1
Investigate how WorkflowHub collects info from Galaxy Toolshed

#5 OliverWoolland opened 6 months ago
0
Deploy metadata only endpoint to production workflowhub

#4 OliverWoolland closed 5 months ago
1
Add docker compose to support local development

#3 OliverWoolland opened 6 months ago
0
Gather SPARQL examples

#2 stain closed 5 months ago
0
Make RO-Crate paths absolute within knowledge graphs

#1 stain closed 5 months ago
7