JakeHattwell
commented
4 years ago Quick Results
Full JSON report will be posted on the WormJam server.
test_metabolite_annotation_presence:
failed
test_reaction_annotation_presence:
failed
test_gene_product_annotation_presence:
passed
test_metabolite_annotation_overview:
pubchem.compound: failed kegg.compound: failed seed.compound: failed inchikey: failed inchi: failed chebi: failed hmdb: failed reactome: failed metanetx.chemical: failed bigg.metabolite: failed biocyc: failed
test_reaction_annotation_overview:
rhea: failed kegg.reaction: failed seed.reaction: failed metanetx.reaction: failed bigg.reaction: failed reactome: failed ec-code: failed brenda: failed biocyc: failed
test_gene_product_annotation_overview:
refseq: failed uniprot: failed ecogene: failed kegg.genes: failed ncbigi: failed ncbigene: failed ncbiprotein: failed ccds: failed hprd: failed asap: failed
test_metabolite_annotation_wrong_ids:
pubchem.compound: failed kegg.compound: failed seed.compound: failed inchikey: failed inchi: failed chebi: failed hmdb: failed reactome: failed metanetx.chemical: failed bigg.metabolite: failed biocyc: failed
test_reaction_annotation_wrong_ids:
rhea: failed kegg.reaction: failed seed.reaction: failed metanetx.reaction: failed bigg.reaction: failed reactome: failed ec-code: failed brenda: failed biocyc: failed
test_gene_product_annotation_wrong_ids:
refseq: failed uniprot: failed ecogene: failed kegg.genes: failed ncbigi: failed ncbigene: failed ncbiprotein: failed ccds: failed hprd: failed asap: failed
test_metabolite_id_namespace_consistency:
passed
test_reaction_id_namespace_consistency:
passed
test_model_id_presence:
passed
test_genes_presence:
passed
test_reactions_presence:
passed
test_metabolites_presence:
passed
test_metabolites_formula_presence:
passed
test_metabolites_charge_presence:
passed
test_gene_protein_reaction_rule_presence:
failed
test_ngam_presence:
failed
test_metabolic_coverage:
passed
test_compartments_presence:
passed
test_protein_complex_presence:
failed
test_find_pure_metabolic_reactions:
failed
test_find_constrained_pure_metabolic_reactions:
failed
test_find_transport_reactions:
failed
test_find_constrained_transport_reactions:
failed
test_transport_reaction_gpr_presence:
failed
test_find_reversible_oxygen_reactions:
passed
test_find_unique_metabolites:
passed
test_find_duplicate_metabolites_in_compartments:
failed
test_find_reactions_with_partially_identical_annotations:
failed
test_find_duplicate_reactions:
failed
test_find_reactions_with_identical_genes:
passed
test_find_medium_metabolites:
failed
test_biomass_presence:
passed
test_biomass_consistency:
BIO0010: failed BIO0015: failed BIO0100: failed BIO0101: failed BIO0102: failed BIO0103: failed Biomass2: failed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_biomass_default_production:
BIO0010: passed BIO0015: passed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: passed deoxynucbiomass_n: passed nucbiomass_m: passed nucbiomass_n: passed
test_biomass_open_production:
BIO0010: passed BIO0015: passed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: passed deoxynucbiomass_n: passed nucbiomass_m: passed nucbiomass_n: passed
test_biomass_precursors_default_production:
BIO0010: passed BIO0015: failed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_biomass_precursors_open_production:
BIO0010: passed BIO0015: failed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_gam_in_biomass:
BIO0010: failed BIO0015: failed BIO0100: failed BIO0101: failed BIO0102: failed BIO0103: failed Biomass2: failed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_fast_growth_default:
BIO0010: passed BIO0015: failed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: passed nucbiomass_n: passed
test_direct_metabolites_in_biomass:
BIO0010: failed BIO0015: failed BIO0100: failed BIO0101: failed BIO0102: failed BIO0103: failed Biomass2: failed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_essential_precursors_not_in_biomass:
BIO0010: failed BIO0015: failed BIO0100: failed BIO0101: failed BIO0102: failed BIO0103: failed Biomass2: failed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_stoichiometric_consistency:
skipped
test_detect_energy_generating_cycles:
MNXM3: skipped MNXM63: skipped MNXM51: skipped MNXM121: skipped MNXM423: skipped MNXM6: skipped MNXM10: skipped MNXM38: skipped MNXM208: skipped MNXM191: skipped MNXM223: skipped MNXM7517: skipped MNXM12233: skipped MNXM558: skipped MNXM21: skipped MNXM89557: skipped
test_reaction_charge_balance:
skipped
test_reaction_mass_balance:
skipped
test_blocked_reactions:
skipped
test_find_stoichiometrically_balanced_cycles:
skipped
test_find_orphans:
skipped
test_find_deadends:
skipped
test_find_disconnected:
skipped
test_find_metabolites_not_produced_with_open_bounds:
skipped
test_find_metabolites_not_consumed_with_open_bounds:
skipped
test_find_reactions_unbounded_flux_default_condition:
skipped
test_gene_essentiality_from_data_qualitative:
experiment0: skipped
test_growth_from_data_qualitative:
experiment0: skipped
test_absolute_extreme_coefficient_ratio:
passed
test_number_independent_conservation_relations:
passed
test_matrix_rank:
passed
test_degrees_of_freedom:
passed
test_sbml_level:
passed
test_fbc_presence:
failed
test_metabolite_sbo_presence:
passed
test_reaction_sbo_presence:
passed
test_gene_sbo_presence:
passed
test_metabolic_reaction_specific_sbo_presence:
failed
test_transport_reaction_specific_sbo_presence:
failed
test_metabolite_specific_sbo_presence:
passed
test_gene_specific_sbo_presence:
passed
test_exchange_specific_sbo_presence:
passed
test_demand_specific_sbo_presence:
passed
test_sink_specific_sbo_presence:
passed
test_biomass_specific_sbo_presence:
failed
test_find_candidate_irreversible_reactions:
failed
Quick Results
Full JSON report will be posted on the WormJam server.
test_metabolite_annotation_presence:
failed
test_reaction_annotation_presence:
failed
test_gene_product_annotation_presence:
passed
test_metabolite_annotation_overview:
pubchem.compound: failed kegg.compound: failed seed.compound: failed inchikey: failed inchi: failed chebi: failed hmdb: failed reactome: failed metanetx.chemical: failed bigg.metabolite: failed biocyc: failed
test_reaction_annotation_overview:
rhea: failed kegg.reaction: failed seed.reaction: failed metanetx.reaction: failed bigg.reaction: failed reactome: failed ec-code: failed brenda: failed biocyc: failed
test_gene_product_annotation_overview:
refseq: failed uniprot: failed ecogene: failed kegg.genes: failed ncbigi: failed ncbigene: failed ncbiprotein: failed ccds: failed hprd: failed asap: failed
test_metabolite_annotation_wrong_ids:
pubchem.compound: failed kegg.compound: failed seed.compound: failed inchikey: failed inchi: failed chebi: failed hmdb: failed reactome: failed metanetx.chemical: failed bigg.metabolite: failed biocyc: failed
test_reaction_annotation_wrong_ids:
rhea: failed kegg.reaction: failed seed.reaction: failed metanetx.reaction: failed bigg.reaction: failed reactome: failed ec-code: failed brenda: failed biocyc: failed
test_gene_product_annotation_wrong_ids:
refseq: failed uniprot: failed ecogene: failed kegg.genes: failed ncbigi: failed ncbigene: failed ncbiprotein: failed ccds: failed hprd: failed asap: failed
test_metabolite_id_namespace_consistency:
passed
test_reaction_id_namespace_consistency:
passed
test_model_id_presence:
passed
test_genes_presence:
passed
test_reactions_presence:
passed
test_metabolites_presence:
passed
test_metabolites_formula_presence:
passed
test_metabolites_charge_presence:
passed
test_gene_protein_reaction_rule_presence:
failed
test_ngam_presence:
failed
test_metabolic_coverage:
passed
test_compartments_presence:
passed
test_protein_complex_presence:
failed
test_find_pure_metabolic_reactions:
failed
test_find_constrained_pure_metabolic_reactions:
failed
test_find_transport_reactions:
failed
test_find_constrained_transport_reactions:
failed
test_transport_reaction_gpr_presence:
failed
test_find_reversible_oxygen_reactions:
passed
test_find_unique_metabolites:
passed
test_find_duplicate_metabolites_in_compartments:
failed
test_find_reactions_with_partially_identical_annotations:
failed
test_find_duplicate_reactions:
failed
test_find_reactions_with_identical_genes:
passed
test_find_medium_metabolites:
failed
test_biomass_presence:
passed
test_biomass_consistency:
BIO0010: failed BIO0015: failed BIO0100: failed BIO0101: failed BIO0102: failed BIO0103: failed Biomass2: failed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_biomass_default_production:
BIO0010: passed BIO0015: passed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: passed deoxynucbiomass_n: passed nucbiomass_m: passed nucbiomass_n: passed
test_biomass_open_production:
BIO0010: passed BIO0015: passed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: passed deoxynucbiomass_n: passed nucbiomass_m: passed nucbiomass_n: passed
test_biomass_precursors_default_production:
BIO0010: passed BIO0015: failed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_biomass_precursors_open_production:
BIO0010: passed BIO0015: failed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_gam_in_biomass:
BIO0010: failed BIO0015: failed BIO0100: failed BIO0101: failed BIO0102: failed BIO0103: failed Biomass2: failed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_fast_growth_default:
BIO0010: passed BIO0015: failed BIO0100: passed BIO0101: passed BIO0102: passed BIO0103: passed Biomass2: passed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: passed nucbiomass_n: passed
test_direct_metabolites_in_biomass:
BIO0010: failed BIO0015: failed BIO0100: failed BIO0101: failed BIO0102: failed BIO0103: failed Biomass2: failed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_essential_precursors_not_in_biomass:
BIO0010: failed BIO0015: failed BIO0100: failed BIO0101: failed BIO0102: failed BIO0103: failed Biomass2: failed deoxynucbiomass_m: failed deoxynucbiomass_n: failed nucbiomass_m: failed nucbiomass_n: failed
test_stoichiometric_consistency:
skipped
test_detect_energy_generating_cycles:
MNXM3: skipped MNXM63: skipped MNXM51: skipped MNXM121: skipped MNXM423: skipped MNXM6: skipped MNXM10: skipped MNXM38: skipped MNXM208: skipped MNXM191: skipped MNXM223: skipped MNXM7517: skipped MNXM12233: skipped MNXM558: skipped MNXM21: skipped MNXM89557: skipped
test_reaction_charge_balance:
skipped
test_reaction_mass_balance:
skipped
test_blocked_reactions:
skipped
test_find_stoichiometrically_balanced_cycles:
skipped
test_find_orphans:
skipped
test_find_deadends:
skipped
test_find_disconnected:
skipped
test_find_metabolites_not_produced_with_open_bounds:
skipped
test_find_metabolites_not_consumed_with_open_bounds:
skipped
test_find_reactions_unbounded_flux_default_condition:
skipped
test_gene_essentiality_from_data_qualitative:
experiment0: skipped
test_growth_from_data_qualitative:
experiment0: skipped
test_absolute_extreme_coefficient_ratio:
passed
test_number_independent_conservation_relations:
passed
test_matrix_rank:
passed
test_degrees_of_freedom:
passed
test_sbml_level:
passed
test_fbc_presence:
failed
test_metabolite_sbo_presence:
passed
test_reaction_sbo_presence:
passed
test_gene_sbo_presence:
passed
test_metabolic_reaction_specific_sbo_presence:
failed
test_transport_reaction_specific_sbo_presence:
failed
test_metabolite_specific_sbo_presence:
passed
test_gene_specific_sbo_presence:
passed
test_exchange_specific_sbo_presence:
passed
test_demand_specific_sbo_presence:
passed
test_sink_specific_sbo_presence:
passed
test_biomass_specific_sbo_presence:
failed
test_find_candidate_irreversible_reactions:
failed