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wormjam-consortium / wormjam

Website/Repository containing the WormJam genome scale model
https://wormjam.life
Creative Commons Attribution 4.0 International
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Bump memote from 0.12.0 to 0.13.0 #79

Closed dependabot[bot] closed 2 years ago

dependabot[bot] commented 3 years ago

Bumps memote from 0.12.0 to 0.13.0.

Release notes

Sourced from memote's releases.

0.13.0

Please see https://github.com/opencobra/memote/blob/0.13.0/HISTORY.rst for the full release notes.

0.12.1

Please see https://github.com/opencobra/memote/blob/0.12.1/HISTORY.rst for the full release notes.

Changelog

Sourced from memote's changelog.

0.13.0 (2021-06-12)

  • Fix logic errors with orphan and dead-end metabolite detection. This problem could occur with irreversible reactions whose bounds constrain flux to the reverse direction.

0.12.1 (2021-06-12)

  • Fix problems with spreadsheet parser. Now supports .xls, .xlsx, and .ods.
  • Fix a bug with models whose biomass optimization is infeasible.
Commits
  • c8bd3fe chore: prepare release notes for 0.13.0
  • 0c8c3cd docs: adjust docstrings slightly
  • c2c5475 fix: correct logic also for dead-end metabolites
  • fa4d586 test: add two test cases asserting new behavior
  • 6e3e90a fix: correct substrate checking logic for orphans
  • 0ea2efd chore: prepare release notes for 0.12.1
  • 5d9afab style: fix flake8 ignore comments
  • 60003be docs: add missing docstring to helper function
  • f67e24b fix: better handle infeasible optimizations
  • 947c831 fix: update spreadsheet reading/writing
  • Additional commits viewable in compare view


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dependabot[bot] commented 2 years ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.