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wososa / PSI-Sigma

PSI-Sigma
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singularity run error #55

Closed ESWRKJ closed 1 year ago

ESWRKJ commented 1 year ago

when I run "singularity exec --bind /mnt:/mnt docker://woodydon/psi_sigma_pipeline:4.0 perl /usr/local/bin/PSI-Sigma-2.3/dummyai.pl --gtf Gbarbadense_gene.sorted.gtf --name PSIsigma --type 1 -nread 10"

FATAL: Unable to handle docker://woodydon/psi_sigma_pipeline:4.0 uri: failed to get checksum for docker://woodydon/psi_sigma_pipeline:4.0: error pinging docker registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 52.1.184.176:443: i/o timeout

wososa commented 1 year ago

Hi @ESWRKJ ,

This is new to me. Could you please try pulling again? It seems to be an internet issue of the docker registry. If it doesn't work, I will see if I can upload the image to Google drive.

Best, Woody

ESWRKJ commented 1 year ago

Hello @wososa Thank you very much for your reply this problem solvedd when I use "singularity exec /public/home/container/psi_sigma_pipeline_4.0.sif perl /usr/local/bin/PSI-Sigma-2.3/dummyai.pl" however I hava a new question , I am working on it