Open Daniel-Mietchen opened 11 years ago
Sometimes, when using oami_pmc_pmcid_import on very recent articles, the metadata on Commons does not show the PMCID. An example is https://commons.wikimedia.org/wiki/File:CCDC65-Mutation-Causes-Primary-Ciliary-Dyskinesia-with-Normal-Ultrastructure-and-Hyperkinetic-Cilia-pone.0072299.s007.ogv , which was uploaded via the session transcribed below.
echo 3753302 | ./oami_pmc_pmcid_import Input PMCIDs, delimited by whitespace: Removing “/home/danielmietchen/.cache/open-access-media-importer/metadata/raw/pmc_pmcid/efetch.fcgi0” … done. Downloading “http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=3753302”, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/metadata/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Skipping 1 records … PLOS ONE 2013 CCDC65 Mutation Causes Primary Ciliary Dyskinesia with Normal Ultrastructure and Hyperkinetic Cilia /usr/lib/python2.7/dist-packages/sqlalchemy/engine/default.py:463: SAWarning: Unicode type received non-unicode bind param value. param.append(processorskey) “CCDC65 Mutation Causes Primary Ciliary Dyskinesia with Normal Ultrastructure and Hyperkinetic Cilia”: 6 × video/mp4 1 × image/tiff
Checking MIME types … 7 of 7 100% |###################################################################################################################| Time: 00:00:10 Skipping http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3043062/bin/pone.0016734.s003.mov, already exists at https://commons.wikimedia.org/w/api.php. Skipping http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3043062/bin/pone.0016734.s004.mov, already exists at https://commons.wikimedia.org/w/api.php. Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s002.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s003.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s004.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s005.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s006.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s007.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Skipping conversion of “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0016734.s002.mov”, earlier attempt failed. Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s002.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s002.mp4.ogv” … 1% |## done.|######################################################################################################################################## | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s003.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s003.mp4.ogv” … 1% |## done.|####################################################################################################################################### | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s004.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s004.mp4.ogv” … 3% |##### done.|#################################################################################################################################### | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s005.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s005.mp4.ogv” … 2% |### done.|####################################################################################################################################### | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s006.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s006.mp4.ogv” … 3% |##### done.|##################################################################################################################################### | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s007.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s007.mp4.ogv” … 3% |#### done.|####################################################################################################################################### | Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s002.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s003.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s004.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s005.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s006.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. Throttled “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s007.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php.
Another example: https://commons.wikimedia.org/wiki/File:Representations-of-pitch-and-slow-modulation-in-auditory-cortex-Audio8.oga .
Daniel-Mietchen
commented
11 years ago Daniel-Mietchen
commented
11 years ago
Sometimes, when using oami_pmc_pmcid_import on very recent articles, the metadata on Commons does not show the PMCID. An example is https://commons.wikimedia.org/wiki/File:CCDC65-Mutation-Causes-Primary-Ciliary-Dyskinesia-with-Normal-Ultrastructure-and-Hyperkinetic-Cilia-pone.0072299.s007.ogv , which was uploaded via the session transcribed below.
echo 3753302 | ./oami_pmc_pmcid_import Input PMCIDs, delimited by whitespace: Removing “/home/danielmietchen/.cache/open-access-media-importer/metadata/raw/pmc_pmcid/efetch.fcgi0” … done. Downloading “http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&id=3753302”, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/metadata/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Skipping 1 records … PLOS ONE 2013 CCDC65 Mutation Causes Primary Ciliary Dyskinesia with Normal Ultrastructure and Hyperkinetic Cilia /usr/lib/python2.7/dist-packages/sqlalchemy/engine/default.py:463: SAWarning: Unicode type received non-unicode bind param value. param.append(processorskey) “CCDC65 Mutation Causes Primary Ciliary Dyskinesia with Normal Ultrastructure and Hyperkinetic Cilia”: 6 × video/mp4 1 × image/tiff
Checking MIME types … 7 of 7 100% |###################################################################################################################| Time: 00:00:10 Skipping http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3043062/bin/pone.0016734.s003.mov, already exists at https://commons.wikimedia.org/w/api.php. Skipping http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3043062/bin/pone.0016734.s004.mov, already exists at https://commons.wikimedia.org/w/api.php. Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s002.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s003.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s004.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s005.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s006.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Downloading http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753302/bin/pone.0072299.s007.mp4, saving into directory “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid” … 100% |#########################################################################################################################################| Skipping conversion of “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0016734.s002.mov”, earlier attempt failed. Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s002.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s002.mp4.ogv” … 1% |## done.|######################################################################################################################################## | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s003.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s003.mp4.ogv” … 1% |## done.|####################################################################################################################################### | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s004.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s004.mp4.ogv” … 3% |##### done.|#################################################################################################################################### | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s005.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s005.mp4.ogv” … 2% |### done.|####################################################################################################################################### | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s006.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s006.mp4.ogv” … 3% |##### done.|##################################################################################################################################### | Converting “/home/danielmietchen/.cache/open-access-media-importer/media/raw/pmc_pmcid/pone.0072299.s007.mp4”, saving into “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s007.mp4.ogv” … 3% |#### done.|####################################################################################################################################### | Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s002.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s003.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s004.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s005.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s006.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php. Authenticating with https://commons.wikimedia.org/w/api.php. Throttled “/home/danielmietchen/.cache/open-access-media-importer/media/refined/pmc_pmcid/pone.0072299.s007.mp4.ogv” uploaded to https://commons.wikimedia.org/w/api.php.