wrf-model / WRF

The official repository for the Weather Research and Forecasting (WRF) model
Other
1.25k stars 689 forks source link

So i try to compile WRF-Chem, but failed, and i've tried some solution but still i dont know the problem #1210

Closed YasratchaLoPO closed 4 years ago

YasratchaLoPO commented 4 years ago

when i try

endeavor@endeavor-Lenovo-Y520-15IKBN:~/Build_WRF/WRFV3$ ./compile em_real >& compile.log &
[1] 25060
endeavor@endeavor-Lenovo-Y520-15IKBN:~/Build_WRF/WRFV3$ tail -f compile.log
15904inputs+168outputs (1major+68500minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'module_radiation_driver.o' failed
make[3]: [module_radiation_driver.o] Error 1 (ignored)
rm -f module_mixactivate.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_mixactivate.F > module_mixactivate.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_mixactivate.G  > module_mixactivate.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_mixactivate.H > module_mixactivate.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe module_mixactivate.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_mixactivate.f90
rm -f module_mixactivate.G module_mixactivate.H module_mixactivate.bb
time mpif90 -f90=gfortran -o module_mixactivate.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    module_mixactivate.f90
4.78user 0.19system 0:05.02elapsed 99%CPU (0avgtext+0avgdata 269468maxresident)k
552inputs+1216outputs (2major+71016minor)pagefaults 0swaps
rm -f module_cu_kfcup.o
rm -f module_microphysics_driver.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_microphysics_driver.F > module_microphysics_driver.G
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_cu_kfcup.F > module_cu_kfcup.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_cu_kfcup.G  > module_cu_kfcup.H
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_microphysics_driver.G  > module_microphysics_driver.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_cu_kfcup.H > module_cu_kfcup.bb
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_microphysics_driver.H > module_microphysics_driver.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe module_microphysics_driver.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_microphysics_driver.f90
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe module_cu_kfcup.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_cu_kfcup.f90
rm -f module_microphysics_driver.G module_microphysics_driver.H module_microphysics_driver.bb
time mpif90 -f90=gfortran -o module_microphysics_driver.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    module_microphysics_driver.f90
rm -f module_cu_kfcup.G module_cu_kfcup.H module_cu_kfcup.bb
time mpif90 -f90=gfortran -o module_cu_kfcup.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    module_cu_kfcup.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
0.20user 0.01system 0:00.30elapsed 73%CPU (0avgtext+0avgdata 26104maxresident)k
552inputs+16outputs (0major+10568minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'module_microphysics_driver.o' failed
make[3]: [module_microphysics_driver.o] Error 1 (ignored)
9.58user 0.18system 0:09.84elapsed 99%CPU (0avgtext+0avgdata 412376maxresident)k
8inputs+2600outputs (0major+110355minor)pagefaults 0swaps
rm -f module_physics_init.o
rm -f module_cumulus_driver.o
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_physics_init.F  > module_physics_init.bb
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_cumulus_driver.F > module_cumulus_driver.G
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe module_physics_init.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_physics_init.f90
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_cumulus_driver.G  > module_cumulus_driver.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_cumulus_driver.H > module_cumulus_driver.bb
rm -f module_physics_init.b module_physics_init.bb
time mpif90 -f90=gfortran -c   -O0 -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4  -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include  module_physics_init.f90
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe module_cumulus_driver.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_cumulus_driver.f90
rm -f module_cumulus_driver.G module_cumulus_driver.H module_cumulus_driver.bb
time mpif90 -f90=gfortran -o module_cumulus_driver.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    module_cumulus_driver.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
3.75user 0.08system 0:03.90elapsed 98%CPU (0avgtext+0avgdata 41160maxresident)k
0inputs+8outputs (0major+13914minor)pagefaults 0swaps
../configure.wrf:533: recipe for target 'module_physics_init.o' failed
make[3]: [module_physics_init.o] Error 1 (ignored)
3.83user 0.21system 0:04.20elapsed 96%CPU (0avgtext+0avgdata 241216maxresident)k
200inputs+432outputs (0major+73160minor)pagefaults 0swaps
make[3]: Leaving directory '/home/endeavor/Build_WRF/WRFV3/phys'
ar: `u' modifier ignored since `D' is the default (see `U')
ar: module_physics_init.o: No such file or directory
Makefile:207: recipe for target 'physics' failed
make[2]: [physics] Error 1 (ignored)
make[2]: Leaving directory '/home/endeavor/Build_WRF/WRFV3/phys'
make[1]: Leaving directory '/home/endeavor/Build_WRF/WRFV3'
if [ 0  -eq 1 ]    ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " chemics ; fi
if [ 1 -eq 1 ]    ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " em_core ; fi
make[1]: Entering directory '/home/endeavor/Build_WRF/WRFV3'
--------------------------------------
if [ 0  -eq 0 ] ; then \
    CF= ; \
else \
    CF="../chem/module_aerosols_sorgam.o ../chem/module_gocart_aerosols.o ../chem/module_mosaic_driver.o ../chem/module_input_tracer.o ../chem/module_aerosols_soa_vbs.o" ; \
fi
( cd dyn_em ; make -i -r -j 2 CF="" )
make[2]: Entering directory '/home/endeavor/Build_WRF/WRFV3/dyn_em'
rm -f ../phys/module_radiation_driver.o
rm -f ../phys/module_surface_driver.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" ../phys/module_radiation_driver.F > ../phys/module_radiation_driver.G
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" ../phys/module_surface_driver.F > ../phys/module_surface_driver.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   ../phys/module_radiation_driver.G  > ../phys/module_radiation_driver.H
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   ../phys/module_surface_driver.G  > ../phys/module_surface_driver.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" ../phys/module_radiation_driver.H > ../phys/module_radiation_driver.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe ../phys/module_radiation_driver.bb | /lib/cpp -P -nostdinc -traditional-cpp > ../phys/module_radiation_driver.f90
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" ../phys/module_surface_driver.H > ../phys/module_surface_driver.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe ../phys/module_surface_driver.bb | /lib/cpp -P -nostdinc -traditional-cpp > ../phys/module_surface_driver.f90
rm -f ../phys/module_radiation_driver.G ../phys/module_radiation_driver.H ../phys/module_radiation_driver.bb
time mpif90 -f90=gfortran -o ../phys/module_radiation_driver.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    ../phys/module_radiation_driver.f90
rm -f ../phys/module_surface_driver.G ../phys/module_surface_driver.H ../phys/module_surface_driver.bb
time mpif90 -f90=gfortran -o ../phys/module_surface_driver.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    ../phys/module_surface_driver.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
0.91user 0.05system 0:01.01elapsed 95%CPU (0avgtext+0avgdata 33068maxresident)k
0inputs+8outputs (0major+12044minor)pagefaults 0swaps
../configure.wrf:341: recipe for target '../phys/module_surface_driver.o' failed
make[2]: [../phys/module_surface_driver.o] Error 1 (ignored)
rm -f module_sfs_driver.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_sfs_driver.F > module_sfs_driver.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_sfs_driver.G  > module_sfs_driver.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_sfs_driver.H > module_sfs_driver.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe module_sfs_driver.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_sfs_driver.f90
rm -f module_sfs_driver.G module_sfs_driver.H module_sfs_driver.bb
time mpif90 -f90=gfortran -o module_sfs_driver.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    module_sfs_driver.f90
../phys/module_radiation_driver.f90:2279:0:

    SUBROUTINE pre_radiation_driver ( grid, config_flags                   &

internal compiler error: Segmentation fault
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
5.25user 0.18system 0:05.57elapsed 97%CPU (0avgtext+0avgdata 246612maxresident)k
8inputs+168outputs (0major+68574minor)pagefaults 0swaps
../configure.wrf:341: recipe for target '../phys/module_radiation_driver.o' failed
make[2]: [../phys/module_radiation_driver.o] Error 1 (ignored)
rm -f ../phys/module_microphysics_driver.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" ../phys/module_microphysics_driver.F > ../phys/module_microphysics_driver.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   ../phys/module_microphysics_driver.G  > ../phys/module_microphysics_driver.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" ../phys/module_microphysics_driver.H > ../phys/module_microphysics_driver.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe ../phys/module_microphysics_driver.bb | /lib/cpp -P -nostdinc -traditional-cpp > ../phys/module_microphysics_driver.f90
rm -f ../phys/module_microphysics_driver.G ../phys/module_microphysics_driver.H ../phys/module_microphysics_driver.bb
time mpif90 -f90=gfortran -o ../phys/module_microphysics_driver.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    ../phys/module_microphysics_driver.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
0.19user 0.01system 0:00.21elapsed 96%CPU (0avgtext+0avgdata 26144maxresident)k
0inputs+8outputs (0major+10575minor)pagefaults 0swaps
../configure.wrf:341: recipe for target '../phys/module_microphysics_driver.o' failed
make[2]: [../phys/module_microphysics_driver.o] Error 1 (ignored)
rm -f ../phys/module_physics_init.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" ../phys/module_physics_init.F > ../phys/module_physics_init.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   ../phys/module_physics_init.G  > ../phys/module_physics_init.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" ../phys/module_physics_init.H > ../phys/module_physics_init.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe ../phys/module_physics_init.bb | /lib/cpp -P -nostdinc -traditional-cpp > ../phys/module_physics_init.f90
rm -f ../phys/module_physics_init.G ../phys/module_physics_init.H ../phys/module_physics_init.bb
time mpif90 -f90=gfortran -o ../phys/module_physics_init.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    ../phys/module_physics_init.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
4.12user 0.04system 0:04.20elapsed 99%CPU (0avgtext+0avgdata 41184maxresident)k
0inputs+8outputs (0major+14537minor)pagefaults 0swaps
../configure.wrf:341: recipe for target '../phys/module_physics_init.o' failed
make[2]: [../phys/module_physics_init.o] Error 1 (ignored)
rm -f module_first_rk_step_part1.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_first_rk_step_part1.F > module_first_rk_step_part1.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_first_rk_step_part1.G  > module_first_rk_step_part1.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_first_rk_step_part1.H > module_first_rk_step_part1.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe module_first_rk_step_part1.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_first_rk_step_part1.f90
rm -f module_first_rk_step_part1.G module_first_rk_step_part1.H module_first_rk_step_part1.bb
time mpif90 -f90=gfortran -o module_first_rk_step_part1.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    module_first_rk_step_part1.f90
module_first_rk_step_part1.f90:697:75:

      &                                                                    )
                                                                           1
Error: Missing actual argument for argument ‘chem’ at (1)
Command exited with non-zero status 1
5.34user 0.17system 0:05.92elapsed 93%CPU (0avgtext+0avgdata 251436maxresident)k
1656inputs+8outputs (0major+69597minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'module_first_rk_step_part1.o' failed
make[2]: [module_first_rk_step_part1.o] Error 1 (ignored)
rm -f start_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" start_em.F > start_em.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   start_em.G  > start_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" start_em.H > start_em.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe start_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > start_em.f90
rm -f start_em.G start_em.H start_em.bb
time mpif90 -f90=gfortran -o start_em.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    start_em.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
5.48user 0.22system 0:05.89elapsed 96%CPU (0avgtext+0avgdata 252732maxresident)k
376inputs+8outputs (0major+69914minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'start_em.o' failed
make[2]: [start_em.o] Error 1 (ignored)
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
34.18user 0.09system 0:34.83elapsed 98%CPU (0avgtext+0avgdata 40072maxresident)k
832inputs+16outputs (0major+15561minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'module_sfs_driver.o' failed
make[2]: [module_sfs_driver.o] Error 1 (ignored)
rm -f module_first_rk_step_part2.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" module_first_rk_step_part2.F > module_first_rk_step_part2.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   module_first_rk_step_part2.G  > module_first_rk_step_part2.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" module_first_rk_step_part2.H > module_first_rk_step_part2.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe module_first_rk_step_part2.bb | /lib/cpp -P -nostdinc -traditional-cpp > module_first_rk_step_part2.f90
rm -f module_first_rk_step_part2.G module_first_rk_step_part2.H module_first_rk_step_part2.bb
time mpif90 -f90=gfortran -o module_first_rk_step_part2.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    module_first_rk_step_part2.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
5.47user 0.13system 0:05.67elapsed 98%CPU (0avgtext+0avgdata 248596maxresident)k
664inputs+8outputs (0major+68112minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'module_first_rk_step_part2.o' failed
make[2]: [module_first_rk_step_part2.o] Error 1 (ignored)
rm -f solve_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" solve_em.F > solve_em.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   solve_em.G  > solve_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" solve_em.H > solve_em.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe solve_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > solve_em.f90
rm -f solve_em.G solve_em.H solve_em.bb
time mpif90 -f90=gfortran -o solve_em.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    solve_em.f90

f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
69.11user 0.27system 1:10.27elapsed 98%CPU (0avgtext+0avgdata 252372maxresident)k
616inputs+16outputs (0major+70166minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'solve_em.o' failed
make[2]: [solve_em.o] Error 1 (ignored)
ar ru ../main/libwrflib.a module_advect_em.o module_diffusion_em.o module_small_step_em.o module_big_step_utilities_em.o module_em.o module_solvedebug_em.o module_bc_em.o module_init_utilities.o module_wps_io_arw.o module_damping_em.o module_polarfft.o module_force_scm.o module_first_rk_step_part1.o module_first_rk_step_part2.o module_avgflx_em.o module_sfs_nba.o module_convtrans_prep.o module_sfs_driver.o module_stoch.o module_after_all_rk_steps.o  init_modules_em.o solve_em.o start_em.o shift_domain_em.o couple_or_uncouple_em.o nest_init_utils.o adapt_timestep_em.o interp_domain_em.o
ar: `u' modifier ignored since `D' is the default (see `U')
ar: module_first_rk_step_part1.o: No such file or directory
Makefile:57: recipe for target 'dyn_em' failed
make[2]: [dyn_em] Error 1 (ignored)
make[2]: Leaving directory '/home/endeavor/Build_WRF/WRFV3/dyn_em'
make[1]: Leaving directory '/home/endeavor/Build_WRF/WRFV3'
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " nmm_core ; fi
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " exp_core ; fi
if [ 0 -eq 1 ]   ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " wrf_hydro ; fi
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " SOLVER=em em_wrf )
make[1]: Entering directory '/home/endeavor/Build_WRF/WRFV3/main'
ranlib  libwrflib.a
time mpif90 -f90=gfortran -o wrf.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4    wrf.o ../main/module_wrf_top.o libwrflib.a /home/endeavor/Build_WRF/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/endeavor/Build_WRF/WRFV3/external/io_grib1/libio_grib1.a /home/endeavor/Build_WRF/WRFV3/external/io_grib_share/libio_grib_share.a /home/endeavor/Build_WRF/WRFV3/external/io_int/libwrfio_int.a -L/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90 -lesmf_time /home/endeavor/Build_WRF/WRFV3/external/RSL_LITE/librsl_lite.a /home/endeavor/Build_WRF/WRFV3/frame/module_internal_header_util.o /home/endeavor/Build_WRF/WRFV3/frame/pack_utils.o  -L/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -lwrfio_nf -L/home/endeavor/Build_WRF/Libraries/netcdf/lib -lnetcdff -lnetcdf   -L/home/endeavor/Build_WRF/WRFV3/external/io_grib2 -lio_grib2 -L/home/endeavor/Build_WRF/Libraries/grib2/lib -ljasper     
/home/endeavor/Build_WRF/Libraries/grib2/lib/libjasper.a(jas_stream.o): In function `jas_stream_tmpfile':
/home/endeavor/Build_WRF/Libraries/jasper-1.900.1/src/libjasper/base/jas_stream.c:368: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x11d181): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x11d408): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x11d6c1): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x11d949): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x11f691): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x11f919): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(solve_interface.o): In function `solve_interface_':
solve_interface.f90:(.text+0xb79): undefined reference to `solve_em_'
solve_interface.f90:(.text+0x2ad1): undefined reference to `chem_driver_'
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x30): undefined reference to `init_modules_em_'
libwrflib.a(mediation_integrate.o): In function `med_nest_initial_':
mediation_integrate.f90:(.text+0x7527): undefined reference to `init_domain_constants_em_'
mediation_integrate.f90:(.text+0x7809): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x78cf): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x79b9): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x7a85): undefined reference to `input_terrain_rsmas_'
mediation_integrate.f90:(.text+0x7aab): undefined reference to `init_domain_vert_nesting_'
mediation_integrate.f90:(.text+0x7b3d): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x7c03): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x7df6): undefined reference to `adjust_tempqv_'
mediation_integrate.f90:(.text+0xce72): undefined reference to `blend_terrain_'
mediation_integrate.f90:(.text+0xcf38): undefined reference to `blend_terrain_'
mediation_integrate.f90:(.text+0xd022): undefined reference to `blend_terrain_'
libwrflib.a(mediation_integrate.o): In function `init_domain_constants_':
mediation_integrate.f90:(.text+0x1251): undefined reference to `init_domain_constants_em_'
libwrflib.a(mediation_force_domain.o): In function `med_force_domain_':
mediation_force_domain.f90:(.text+0x42e4): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x5e19): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x790e): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x9409): undefined reference to `couple_or_uncouple_em_'
libwrflib.a(mediation_feedback_domain.o): In function `med_feedback_domain_':
mediation_feedback_domain.f90:(.text+0x2d18): undefined reference to `update_after_feedback_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0xa2b): undefined reference to `start_domain_em_'
collect2: error: ld returned 1 exit status
Command exited with non-zero status 1
0.55user 0.24system 0:01.60elapsed 49%CPU (0avgtext+0avgdata 94760maxresident)k
20648inputs+103568outputs (0major+30811minor)pagefaults 0swaps
Makefile:16: recipe for target 'em_wrf' failed
make[1]: [em_wrf] Error 1 (ignored)
make[1]: Leaving directory '/home/endeavor/Build_WRF/WRFV3/main'
( cd run ; /bin/rm -f wrf.exe ; ln -s ../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
  ( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " SOLVER=em em_wrf_SST_ESMF ) ; \
fi
build started:   Sel Jun 16 21:37:46 WIB 2020
build completed: Sel Jun 16 21:40:13 WIB 2020
--------------------------------------
( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " SOLVER=em IDEAL_CASE=real em_real )
make[1]: Entering directory '/home/endeavor/Build_WRF/WRFV3/main'
rm -f ndown_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" ndown_em.F > ndown_em.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   ndown_em.G  > ndown_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" ndown_em.H > ndown_em.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe ndown_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > ndown_em.f90
rm -f ndown_em.G ndown_em.H ndown_em.bb
time mpif90 -f90=gfortran -o ndown_em.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    ndown_em.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
0.17user 0.02system 0:00.21elapsed 91%CPU (0avgtext+0avgdata 31584maxresident)k
560inputs+8outputs (0major+10889minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'ndown_em.o' failed
make[1]: [ndown_em.o] Error 1 (ignored)
rm -f tc_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" tc_em.F > tc_em.G
/lib/cpp -P -nostdinc -I/home/endeavor/Build_WRF/WRFV3/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_SUBR  -DWRF_USE_CLM  -DDM_PARALLEL -DNETCDF -DGRIB2 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0  -I. -traditional-cpp   tc_em.G  > tc_em.H
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" tc_em.H > tc_em.bb
/home/endeavor/Build_WRF/WRFV3/tools/standard.exe tc_em.bb | /lib/cpp -P -nostdinc -traditional-cpp > tc_em.f90
rm -f tc_em.G tc_em.H tc_em.bb
time mpif90 -f90=gfortran -o tc_em.o -c -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include    tc_em.f90
f951: internal compiler error: in read_module, at fortran/module.c:5084
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
Command exited with non-zero status 1
1.72user 0.01system 0:01.79elapsed 97%CPU (0avgtext+0avgdata 41444maxresident)k
800inputs+8outputs (0major+14976minor)pagefaults 0swaps
../configure.wrf:341: recipe for target 'tc_em.o' failed
make[1]: [tc_em.o] Error 1 (ignored)
ranlib  libwrflib.a
time mpif90 -f90=gfortran -o ndown.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4    ndown_em.o  ../dyn_em/module_initialize_real.o libwrflib.a /home/endeavor/Build_WRF/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/endeavor/Build_WRF/WRFV3/external/io_grib1/libio_grib1.a /home/endeavor/Build_WRF/WRFV3/external/io_grib_share/libio_grib_share.a /home/endeavor/Build_WRF/WRFV3/external/io_int/libwrfio_int.a -L/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90 -lesmf_time /home/endeavor/Build_WRF/WRFV3/external/RSL_LITE/librsl_lite.a /home/endeavor/Build_WRF/WRFV3/frame/module_internal_header_util.o /home/endeavor/Build_WRF/WRFV3/frame/pack_utils.o  -L/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -lwrfio_nf -L/home/endeavor/Build_WRF/Libraries/netcdf/lib -lnetcdff -lnetcdf   -L/home/endeavor/Build_WRF/WRFV3/external/io_grib2 -lio_grib2 -L/home/endeavor/Build_WRF/Libraries/grib2/lib -ljasper    
gfortran: error: ndown_em.o: No such file or directory
Command exited with non-zero status 1
0.09user 0.05system 0:00.15elapsed 101%CPU (0avgtext+0avgdata 3488maxresident)k
0inputs+0outputs (0major+5572minor)pagefaults 0swaps
Makefile:28: recipe for target 'em_real' failed
make[1]: [em_real] Error 1 (ignored)
#TEMPORARILY REMOVED time mpif90 -f90=gfortran -o nup.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4    nup_em.o  ../dyn_em/module_initialize_real.o libwrflib.a /home/endeavor/Build_WRF/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/endeavor/Build_WRF/WRFV3/external/io_grib1/libio_grib1.a /home/endeavor/Build_WRF/WRFV3/external/io_grib_share/libio_grib_share.a /home/endeavor/Build_WRF/WRFV3/external/io_int/libwrfio_int.a -L/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90 -lesmf_time /home/endeavor/Build_WRF/WRFV3/external/RSL_LITE/librsl_lite.a /home/endeavor/Build_WRF/WRFV3/frame/module_internal_header_util.o /home/endeavor/Build_WRF/WRFV3/frame/pack_utils.o  -L/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -lwrfio_nf -L/home/endeavor/Build_WRF/Libraries/netcdf/lib -lnetcdff -lnetcdf   -L/home/endeavor/Build_WRF/WRFV3/external/io_grib2 -lio_grib2 -L/home/endeavor/Build_WRF/Libraries/grib2/lib -ljasper    
time mpif90 -f90=gfortran -o tc.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4    tc_em.o  ../dyn_em/module_initialize_real.o libwrflib.a /home/endeavor/Build_WRF/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/endeavor/Build_WRF/WRFV3/external/io_grib1/libio_grib1.a /home/endeavor/Build_WRF/WRFV3/external/io_grib_share/libio_grib_share.a /home/endeavor/Build_WRF/WRFV3/external/io_int/libwrfio_int.a -L/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90 -lesmf_time /home/endeavor/Build_WRF/WRFV3/external/RSL_LITE/librsl_lite.a /home/endeavor/Build_WRF/WRFV3/frame/module_internal_header_util.o /home/endeavor/Build_WRF/WRFV3/frame/pack_utils.o  -L/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -lwrfio_nf -L/home/endeavor/Build_WRF/Libraries/netcdf/lib -lnetcdff -lnetcdf   -L/home/endeavor/Build_WRF/WRFV3/external/io_grib2 -lio_grib2 -L/home/endeavor/Build_WRF/Libraries/grib2/lib -ljasper    
gfortran: error: tc_em.o: No such file or directory
Command exited with non-zero status 1
0.04user 0.01system 0:00.06elapsed 98%CPU (0avgtext+0avgdata 3384maxresident)k
0inputs+0outputs (0major+5563minor)pagefaults 0swaps
Makefile:28: recipe for target 'em_real' failed
make[1]: [em_real] Error 1 (ignored)
time mpif90 -f90=gfortran -o real.exe  -O2 -ftree-vectorize -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4    real_em.o ../dyn_em/module_initialize_real.o libwrflib.a /home/endeavor/Build_WRF/WRFV3/external/fftpack/fftpack5/libfftpack.a /home/endeavor/Build_WRF/WRFV3/external/io_grib1/libio_grib1.a /home/endeavor/Build_WRF/WRFV3/external/io_grib_share/libio_grib_share.a /home/endeavor/Build_WRF/WRFV3/external/io_int/libwrfio_int.a -L/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90 -lesmf_time /home/endeavor/Build_WRF/WRFV3/external/RSL_LITE/librsl_lite.a /home/endeavor/Build_WRF/WRFV3/frame/module_internal_header_util.o /home/endeavor/Build_WRF/WRFV3/frame/pack_utils.o  -L/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -lwrfio_nf -L/home/endeavor/Build_WRF/Libraries/netcdf/lib -lnetcdff -lnetcdf   -L/home/endeavor/Build_WRF/WRFV3/external/io_grib2 -lio_grib2 -L/home/endeavor/Build_WRF/Libraries/grib2/lib -ljasper    
/home/endeavor/Build_WRF/Libraries/grib2/lib/libjasper.a(jas_stream.o): In function `jas_stream_tmpfile':
/home/endeavor/Build_WRF/Libraries/jasper-1.900.1/src/libjasper/base/jas_stream.c:368: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
real_em.o: In function `assemble_output_':
real_em.f90:(.text+0x6c26): undefined reference to `__module_big_step_utilities_em_MOD_couple'
real_em.f90:(.text+0x6e07): undefined reference to `__module_big_step_utilities_em_MOD_couple'
real_em.f90:(.text+0x6ff1): undefined reference to `__module_big_step_utilities_em_MOD_couple'
real_em.f90:(.text+0x71d6): undefined reference to `__module_big_step_utilities_em_MOD_couple'
real_em.f90:(.text+0x7478): undefined reference to `__module_big_step_utilities_em_MOD_couple'
real_em.o:real_em.f90:(.text+0x7a83): more undefined references to `__module_big_step_utilities_em_MOD_couple' follow
../dyn_em/module_initialize_real.o: In function `__module_initialize_real_MOD_init_domain_rk':
module_initialize_real.f90:(.text+0x3488a): undefined reference to `blend_terrain_'
module_initialize_real.f90:(.text+0x45119): undefined reference to `__module_polarfft_MOD_pxft'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x11d181): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x11d408): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x11d6c1): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x11d949): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x11f691): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x11f919): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x30): undefined reference to `init_modules_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0xa2b): undefined reference to `start_domain_em_'
collect2: error: ld returned 1 exit status
Command exited with non-zero status 1
0.39user 0.11system 0:00.63elapsed 79%CPU (0avgtext+0avgdata 93628maxresident)k
1184inputs+102608outputs (0major+30488minor)pagefaults 0swaps
Makefile:28: recipe for target 'em_real' failed
make[1]: [em_real] Error 1 (ignored)
make[1]: Leaving directory '/home/endeavor/Build_WRF/WRFV3/main'
( cd test/em_real ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
  ( cd main ; make -i -r RLFLAGS="" MODULE_DIRS="-I../dyn_em -I../dyn_nmm   -I/home/endeavor/Build_WRF/WRFV3/external/esmf_time_f90  -I/home/endeavor/Build_WRF/WRFV3/main -I/home/endeavor/Build_WRF/WRFV3/external/io_netcdf -I/home/endeavor/Build_WRF/WRFV3/external/io_int -I/home/endeavor/Build_WRF/WRFV3/frame -I/home/endeavor/Build_WRF/WRFV3/share -I/home/endeavor/Build_WRF/WRFV3/phys -I/home/endeavor/Build_WRF/WRFV3/chem -I/home/endeavor/Build_WRF/WRFV3/inc -I/home/endeavor/Build_WRF/Libraries/netcdf/include " SOLVER=em IDEAL_CASE=real em_wrf_SST_ESMF ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f wrf_SST_ESMF.exe ; ln -s ../../main/wrf_SST_ESMF.exe . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ; \
               ln -sf ../../run/ETAMPNEW_DATA . ;                      \
               ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ;        \
               ln -sf ../../run/RRTM_DATA . ;                          \
               ln -sf ../../run/RRTMG_LW_DATA . ;                      \
               ln -sf ../../run/RRTMG_SW_DATA . ;                      \
               ln -sf ../../run/CAM_ABS_DATA . ;                       \
               ln -sf ../../run/CAM_AEROPT_DATA . ;                    \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6   . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B    . ;   \
               ln -sf ../../run/CAMtr_volume_mixing_ratio.A2     . ;   \
               ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_DRDSDT0_DATA . ;                   \
               ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ;               \
               ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ;               \
               ln -sf ../../run/CLM_KAPPA_DATA . ;                     \
               ln -sf ../../run/CLM_TAU_DATA . ;                       \
               ln -sf ../../run/ozone.formatted . ;                    \
               ln -sf ../../run/ozone_lat.formatted . ;                \
               ln -sf ../../run/ozone_plev.formatted . ;               \
               ln -sf ../../run/aerosol.formatted . ;                  \
               ln -sf ../../run/aerosol_lat.formatted . ;              \
               ln -sf ../../run/aerosol_lon.formatted . ;              \
               ln -sf ../../run/aerosol_plev.formatted . ;             \
               ln -sf ../../run/CCN_ACTIVATE.BIN . ;                   \
               ln -sf ../../run/p3_lookup_table_1.dat . ;              \
               if [ 4 -eq 8 ] ; then                        \
                  ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ;   \
                  ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ;   \
                  ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA         ;   \
                  ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ;   \
                  ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ;   \
               fi ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . ) ; \
  ( cd test/em_esmf_exp ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . ) ; \
fi
( cd test/em_real ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . )
( cd test/em_real ; /bin/rm -f tc.exe ; ln -s ../../main/tc.exe . )
( cd test/em_real ; /bin/rm -f ndown.exe ; ln -s ../../main/ndown.exe . )
#TEMPORARILY REMOVED ( cd test/em_real ; /bin/rm -f nup.exe ; ln -s ../../main/nup.exe . )
( cd test/em_real ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . )
( cd test/em_real ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ;    \
             ln -sf ../../run/ETAMPNEW_DATA . ;                     \
             ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ;       \
             ln -sf ../../run/RRTM_DATA . ;                         \
             ln -sf ../../run/RRTMG_LW_DATA . ;                     \
             ln -sf ../../run/RRTMG_SW_DATA . ;                     \
             ln -sf ../../run/CAM_ABS_DATA . ;                      \
             ln -sf ../../run/CAM_AEROPT_DATA . ;                   \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6   . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ;   \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B    . ;  \
             ln -sf ../../run/CAMtr_volume_mixing_ratio.A2     . ;  \
             ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_DRDSDT0_DATA . ;                  \
             ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ;              \
             ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ;              \
             ln -sf ../../run/CLM_KAPPA_DATA . ;                    \
             ln -sf ../../run/CLM_TAU_DATA . ;                      \
             ln -sf ../../run/ozone.formatted . ;                   \
             ln -sf ../../run/ozone_lat.formatted . ;               \
             ln -sf ../../run/ozone_plev.formatted . ;              \
             ln -sf ../../run/aerosol.formatted . ;                 \
             ln -sf ../../run/aerosol_lat.formatted . ;             \
             ln -sf ../../run/aerosol_lon.formatted . ;             \
             ln -sf ../../run/aerosol_plev.formatted . ;            \
             ln -sf ../../run/capacity.asc . ;            \
             ln -sf ../../run/coeff_p.asc . ;            \
             ln -sf ../../run/coeff_q.asc . ;            \
             ln -sf ../../run/constants.asc . ;            \
             ln -sf ../../run/masses.asc . ;            \
             ln -sf ../../run/termvels.asc . ;            \
             ln -sf ../../run/kernels.asc_s_0_03_0_9 . ;            \
             ln -sf ../../run/kernels_z.asc . ;            \
             ln -sf ../../run/bulkdens.asc_s_0_03_0_9 . ;            \
             ln -sf ../../run/bulkradii.asc_s_0_03_0_9 . ;            \
             ln -sf ../../run/CCN_ACTIVATE.BIN . ;                   \
             ln -sf ../../run/p3_lookup_table_1.dat . ;                   \
             if [ 4 -eq 8 ] ; then                       \
                ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ;  \
                ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ;   \
                ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ;          \
                ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ;  \
                ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ;  \
             fi )
( cd test/em_real ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . )
( cd test/em_real ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . )
( cd test/em_real ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . )
( cd test/em_real ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . )
( cd test/em_real ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . )
( cd test/em_real ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . )
( cd test/em_real ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . )
( cd test/em_real ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . )
( cd test/em_real ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . )
( cd test/em_real ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . )
( cd test/em_real ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . )
( cd run ; /bin/rm -f real.exe ; ln -s ../main/real.exe . )
( cd run ; /bin/rm -f tc.exe ; ln -s ../main/tc.exe . )
( cd run ; /bin/rm -f ndown.exe ; ln -s ../main/ndown.exe . )
#TEMPORARILY REMOVED ( cd run ; /bin/rm -f nup.exe ; ln -s ../main/nup.exe . )
( cd run ; if test -f namelist.input ; then \
    /bin/cp -f namelist.input namelist.input.backup.`date +%Y-%m-%d_%H_%M_%S` ; fi ; \
    /bin/rm -f namelist.input ; cp ../test/em_real/namelist.input . )

==========================================================================
build started:   Sel Jun 16 21:37:46 WIB 2020
build completed: Sel Jun 16 21:40:17 WIB 2020

---> Problems building executables, look for errors in the build log  <---

==========================================================================

^Z[1]   Done                    ./compile em_real &> compile.log

[2]+  Stopped                 tail -f compile.log

sorry about the format, i'm new here. i'm using 3.9.1 ver

weiwangncar commented 4 years ago

Please post this to the Forum: https://forum.mmm.ucar.edu. Thanks.