WRFCHEM DA needs to run compile twice on intel llvm compilers

HathewayWill commented 6 months ago

Describe the bug A clear and concise description of what the bug is.

certain DA lists are not compiled on a first installation, missing linkers I believe. After running compile again it finds the missing files and creates wrfchem da with intel llvm compilers.

To Reproduce Steps to reproduce the behavior:

cd $WRFCHEM_FOLDER/Downloads
    cd $WRFCHEM_FOLDER/Downloads
    wget -c https://github.com/wrf-model/WRF/releases/download/v$WRF_VERSION/v$WRF_VERSION.tar.gz -O WRF-$WRF_VERSION.tar.gz
    mkdir $WRFCHEM_FOLDER/WRFDA
    tar -xvzf WRF-$WRF_VERSION.tar.gz -C $WRFCHEM_FOLDER/WRFDA
    # If statment for changing folder name
    if [ -d "$WRFCHEM_FOLDER/WRFDA/WRF" ]; then
        mv -f $WRFCHEM_FOLDER/WRFDA/WRF $WRFCHEM_FOLDER/WRFDA/WRFV$WRF_VERSION
    fi
    cd $WRFCHEM_FOLDER/WRFDA/WRFV$WRF_VERSION
    mv * $WRFCHEM_FOLDER/WRFDA
    cd $WRFCHEM_FOLDER/WRFDA
    rm -rf WRFV$WRF_VERSION/
    cd $WRFCHEM_FOLDER/WRFDA

    ulimit -s unlimited
    export WRF_CHEM=1
    export WRFIO_NCD_LARGE_FILE_SUPPORT=1

    ./clean -a

    if [ ${auto_config} -eq 1 ]; then
        echo 78 | ./configure wrfda 2>&1 | tee configure.log #Option 78 for intel and distribunted memory
    else
        ./configure wrfda 2>&1 | tee configure.log #Option 78 for intel and distribunted memory
    fi
    echo " "

    #Need to remove mpich/GNU config calls to Intel config calls
    sed -i '136s|mpif90 -f90=$(SFC)|mpiifx|g' $WRFCHEM_FOLDER/WRFDA/configure.wrf
    sed -i '137s|mpicc -cc=$(SCC)|mpiicx|g' $WRFCHEM_FOLDER/WRFDA/configure.wrf
    sed -i '144s|-ip|-ip -Wno-implicit-function-declaration -Wno-incompatible-function-pointer-types |g' $WRFCHEM_FOLDER/WRFDA/configure.wrf
    sed -i '145s|-ip|-ip -Wno-implicit-function-declaration -Wno-incompatible-function-pointer-types |g' $WRFCHEM_FOLDER/WRFDA/configure.wrf

    ./compile -j $CPU_HALF_EVEN all_wrfvar 2>&1 | tee compile.chem.wrfvar.log
    echo " "

    # IF statement to check that all files were created.
    cd $WRFCHEM_FOLDER/WRFDA/var/da
    n=$(ls ./*.exe | wc -l)
    cd $WRFCHEM_FOLDER/WRFDA/var/obsproc/src
    m=$(ls ./*.exe | wc -l)
    if ((($n == 43) && ($m == 1))); then
        echo "All expected files created."
        read -r -t 5 -p "Finished installing WRFDA. I am going to wait for 5 seconds only ..."
    else
        echo "Missing one or more expected files."
        echo "Running compiler again"
        cd $WRFCHEM_FOLDER/WRFDA
        ./compile -j $CPU_HALF_EVEN all_wrfvar 2>&1 | tee compile.chem.wrfvar2.log
        cd $WRFCHEM_FOLDER/WRFDA/var/da
        n=$(ls ./*.exe | wc -l)
        cd $WRFCHEM_FOLDER/WRFDA/var/obsproc/src
        m=$(ls ./*.exe | wc -l)
        if ((($n == 43) && ($m == 1))); then
            echo "All expected files created."
            read -r -t 5 -p "Finished installing WRFDA. I am going to wait for 5 seconds only ..."
        else
            read -r -p "Please contact script authors for assistance, press 'Enter' to exit script."
            exit
        fi
    fi
    echo " "

Expected behavior files should all be linked on first run.

Attachments

compile.chem.wrfvar.log compile.chem.wrfvar2.log configure.log configure.wrf.txt