Hi,
I ran interproscan.sh --cpu 10 --input $1 --seqtype p --iprlookup --pathways --goterms -d $2 --tempdir interproscan-dp-tmp and got the following output files:
augustus.hints_utr.aa.gff3
augustus.hints_utr.aa.tsv
augustus.hints_utr.aa.xml
Now I would like to load the results into JBrowse. However, the coordinates do not match the genomic coordinates. By any chance, do you have any scripts to convert InterPro scan results to genomic coordinates?
Hi, I ran
interproscan.sh --cpu 10 --input $1 --seqtype p --iprlookup --pathways --goterms -d $2 --tempdir interproscan-dp-tmpand got the following output files:Now I would like to load the results into JBrowse. However, the coordinates do not match the genomic coordinates. By any chance, do you have any scripts to convert InterPro scan results to genomic coordinates?
Thank you in advance,
Michal