wrfchem-leeds / WRFotron

Tools to automatise WRF-Chem runs with re-initialised meteorology
https://wrfchem-leeds.github.io/WRFotron/
GNU Affero General Public License v3.0
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./real.exe: error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory #56

Open setarehrahimi opened 1 year ago

setarehrahimi commented 1 year ago

I am trying to install WRF-Chem version 4.2.1 using an Intel compiler on a HPC . I installed mpich, netcdf-c, netcdf-fortran, zlib and jasper to do so. However after compiling WRF-Chem, I tried to run real.exe and faced below error: ./real.exe: error while loading shared libraries: libifport.so.5: cannot open shared object file: No such file or directory

I insert "ldd real.exe" command , and here is the result : ldd real.exe linux-vdso.so.1 => (0x00007fffc5acf000) libnetcdff.so.7 => /backup3/seti/setii/WRF-CHEM/LIBRARIES/netcdf/lib/libnetcdff.so.7 (0x00002b5db2dc8000) libmpifort.so.12 => /backup3/seti/setii/WRF-CHEM/LIBRARIES/mpich/lib/libmpifort.so.12 (0x00002b5db3415000) libmpi.so.12 => /backup3/seti/setii/WRF-CHEM/LIBRARIES/mpich/lib/libmpi.so.12 (0x00002b5db3716000) libm.so.6 => /lib64/libm.so.6 (0x0000003943600000) libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003943e00000) libc.so.6 => /lib64/libc.so.6 (0x0000003943200000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003946e00000) libdl.so.2 => /lib64/libdl.so.2 (0x0000003943a00000) libifport.so.5 => not found libifcoremt.so.5 => not found libimf.so => not found libsvml.so => not found libintlc.so.5 => not found librt.so.1 => /lib64/librt.so.1 (0x0000003944600000) /lib64/ld-linux-x86-64.so.2 (0x00002b5db2ba5000) libifport.so.5 => not found libifcoremt.so.5 => not found libimf.so => not found libintlc.so.5 => not found libsvml.so => not found libimf.so => not found libsvml.so => not found libirng.so => not found libintlc.so.5 => not found

module list Currently Loaded Modulefiles: 1) mathematica11 2) intel-mpi-5 3) intel-ics-2015

conda list

packages in environment at /opt/intel/intelpython3:

# asn1crypto 0.24.0 py36_3 file:///opt/intel/conda_channel bzip2 1.0.6 17 intel certifi 2018.1.18 py36_2 file:///opt/intel/conda_channel cffi 1.11.5 py36_3 file:///opt/intel/conda_channel chardet 3.0.4 py36_3 file:///opt/intel/conda_channel conda 4.3.31 py36_3 file:///opt/intel/conda_channel conda-env 2.6.0 0 intel cryptography 2.3 py36_1 file:///opt/intel/conda_channel cycler 0.10.0 py36_7 intel cython 0.29.6 py36h7b7c402_0 intel daal 2019.4 intel_243 file:///opt/intel/conda_channel daal4py 2019.4 py36h7b7c402_0 intel freetype 2.9 3 intel funcsigs 1.0.2 py36_7 intel icc_rt 2019.4 intel_243 file:///opt/intel/conda_channel idna 2.6 py36_3 file:///opt/intel/conda_channel impi_rt 2019.4 intel_243 file:///opt/intel/conda_channel intel-openmp 2019.4 intel_243 file:///opt/intel/conda_channel intelpython 2019.4 0 intel ipp 2019.4 intel_243 file:///opt/intel/conda_channel kiwisolver 1.0.1 py36_2 intel libffi 3.2.1 11 intel libpng 1.6.36 2 intel llvmlite 0.27.1 py36_0 intel matplotlib 3.0.3 py36_4 intel mkl 2019.4 intel_243 file:///opt/intel/conda_channel mkl-service 1.0.0 py36h7b7c402_11 intel mkl_fft 1.0.11 py36h7b7c402_2 intel mkl_random 1.0.2 py36h7b7c402_4 intel mpi4py 3.0.0 py36_3 intel numba 0.42.1 np116py36_2 intel numexpr 2.6.8 py36_2 intel numpy 1.16.2 py36h7b7c402_0 intel numpy-base 1.16.2 py36_0 intel openssl 1.0.2r 2 file:///opt/intel/conda_channel pandas 0.24.1 py36_3 intel pip 10.0.1 py36_0 file:///opt/intel/conda_channel pycosat 0.6.3 py36_3 file:///opt/intel/conda_channel pycparser 2.18 py36_2 file:///opt/intel/conda_channel pyeditline 2.0.0 py36_0 intel pyopenssl 17.5.0 py36_2 file:///opt/intel/conda_channel pyparsing 2.2.0 py36_2 intel pysocks 1.6.7 py36_1 file:///opt/intel/conda_channel python 3.6.8 7 file:///opt/intel/conda_channel python-dateutil 2.6.0 py36_12 intel pytz 2018.4 py36_3 intel pyyaml 4.1 py36_3 intel requests 2.20.1 py36_1 file:///opt/intel/conda_channel ruamel_yaml 0.11.14 py36_4 file:///opt/intel/conda_channel scikit-learn 0.20.3 py36h7b7c402_5 intel scipy 1.2.1 py36h7b7c402_3 intel setuptools 39.0.1 py36_0 file:///opt/intel/conda_channel six 1.11.0 py36_3 file:///opt/intel/conda_channel smp 0.1.4 py36_0 intel sqlite 3.27.2 4 intel tbb 2019.6 intel_243 file:///opt/intel/conda_channel tbb4py 2019.6 py36_intel_0 file:///opt/intel/conda_channel tcl 8.6.4 24 intel tk 8.6.4 29 intel urllib3 1.24.1 py36_2 file:///opt/intel/conda_channel wheel 0.31.0 py36_3 file:///opt/intel/conda_channel wrf-python 1.3.2 py38h7eb8c7e_1 https:// xgboost 0.81 py36_0 intel xz 5.2.3 2 intel yaml 0.1.7 2 intel zlib 1.2.11 5 intel

I also noticed a discussion related to my similar problem ( https://github.com/wrfchem-leeds/WRFotron/issues/14 ), but I could not follow it because I am new in this field (I do not know what is pre.bash and config.bash) . So may I ask you please to kindly help me to sort this issue out. I have been struggling with the issue for 3 months, and did no progress to do my dissertation. Please help me.

any suggestion appreciated, Best wishes,