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wsdewitt / phyload

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Try with an extreme level of epi strength #25

Closed skhilton closed 5 years ago

skhilton commented 5 years ago

maybe d=100?

afmagee commented 5 years ago

Let's use d=10000 for this. In trying to understand the Goldman-Yang behavior, I coded up a calculator for the percent of substitutions (on site-pairs) that should be doublet substitutions, and at d=100 it's 91.5% (for our exchange rates and doublet frequencies) whereas at 10000 it's 99.9%.

afmagee commented 5 years ago

We did this, we found a bug, it was useful.