issues
search
wshuai294
/
PStrain
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
MIT License
8
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error: File truncated at line 1 Could not build fai index out/test//ref//merged_ref.fa.fai
#14
sahilrishav2
closed
5 months ago
26
Error running PStrain_V30.py script
#13
sahilrishav2
closed
6 months ago
19
Reproducibility
#12
andrewjmc
opened
2 years ago
5
Threading and parallelisation across species
#11
andrewjmc
closed
2 years ago
12
Use existing metaphlan3 run
#10
andrewjmc
closed
2 years ago
5
--similarity cutoff default
#9
ShriramHPatel
opened
3 years ago
1
A snippet offering a for-loop based config construction script
#8
ctseto
closed
1 year ago
1
Java version for GATK?
#7
yuxiangtan
closed
3 years ago
2
Auto detection of dependenies
#6
yuxiangtan
closed
3 years ago
1
The strain_RA.txt different from the intermediate metaphlan2_output.txt
#5
weiting-liang
closed
3 years ago
4
Could not build fai index ./output/test//ref//merged_ref.fa.fai
#4
weiting-liang
closed
3 years ago
4
How to make a marker gene?
#3
zckoo007
closed
3 years ago
1
Tutorial issues with gzip files
#2
ctseto
closed
3 years ago
1
metaphlan3 support?
#1
nick-youngblut
closed
3 years ago
5