Updated pipeline to search for NTC, Sample Name and Run Name in fastq file names using regex parameters. If a matching Sample Name is found, it will replace the fastq file name in the Sample column. The Run Name will be added to a new column, Run, if a Run Name is found. If NTC is found in the file name, it will be routed to the NTC steps of the pipeline. The total NTC limit threshold was also changed to 10000. The pipeline's version number has been updated in nextflow.config. The project's README and documentation have also been updated to reflect any changes.
Updated pipeline to search for NTC, Sample Name and Run Name in fastq file names using regex parameters. If a matching Sample Name is found, it will replace the fastq file name in the Sample column. The Run Name will be added to a new column, Run, if a Run Name is found. If NTC is found in the file name, it will be routed to the NTC steps of the pipeline. The total NTC limit threshold was also changed to 10000. The pipeline's version number has been updated in nextflow.config. The project's README and documentation have also been updated to reflect any changes.