wsphillips
commented
1 year ago The LIF model needs to be reworked, both the demo and supporting backend. Sorry--it should have been temporarily redacted. It was written before some more recent changes were implemented. Originally the LIF model was coded explicitly in Conductor.jl, but I'm trying to avoid hard coding model equations into the backend going forward and instead separate concrete models from the core library.
To get LIF working "the right way":
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With callbacks/events now implemented, the next step would involve writing a
CompartmentSystemmethod that accepts a voltage reset functor which can be subsequently used to create a callback set analogous to the way synapses work. -
Since LIF neurons are typically specified as populations,
Populationneeds some work (currently stale/unexported placeholder code).Populationis intended to work likeNeuronGroupin Brian2, letting one specifyntotal neurons in one call.
There's still development going on and things may change before v1.0 gets tagged, but contributions are absolutely welcome. Generally, examples are helpful because they become test cases that help guide design decisions. This could even be as simple as a gist of mock code showing what you would want to do, even if it does not yet work.
mapi1
Thank you for this great package and bringing ModelingToolkit to the world of neuronal modeling! I was interested in simple threshold based neuron models (QIF, Izhikevich), so I started out with the LIF demo in order to adopt it later on. But it seems sth changed in the meantime, causing the following error with the current version @main and Julia 1.8:
And in general, how would you describe the current state of this package? E.g. would you already welcome contributions for other models to build up a zoo or is there a lot of change in the overall structure to be expected, so this would only cause overhead in adjustments all the time?